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7 protocols using itc 502

1

Photophysical Properties of Eu(III) and Gd(III) Complexes

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1H-NMR spectra were recorded in CDCl3 on a JEOL ECS-400 (400 MHz) spectrometer; tetramethylsilane was used as the internal reference. Electron ionization (EI) and electrospray ionization (ESI) mass spectrometry were performed using JEOL JMS-T100 GCv and JEOL JMS-T100 LP instruments, respectively. Elemental analyses were performed using MICRO CORDER JM10. UV-vis absorption spectra for ligand 1 and Eu(III) complex 2 were measured using a JASCO V-670 spectrophotometer. Emission spectrum, excitation spectrum, and emission lifetime for Eu(III) complex 2 were measured using a Horiba FluoroLog®3 spectrofluorometer. Emission spectrum and lifetime for Gd(III) complex 5 were measured using a FP-6300 spectrofluorometer with a nitrogen bath cryostat (Oxford Instruments, Optistat DN) and a temperature controller (Oxford Instruments ITC-502S). Emission spectrum for the ligand 1 was measured using a FP-6300 spectrofluorometer with a nitrogen bath cryostat (Oxford Instruments, Optistat DN) and a temperature controller (Oxford Instruments ITC-502S). Emission quantum yield for Eu(III) complex 2 was measured using a FP-6300 spectrofluorometer with an integration sphere (ILF-533).
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2

PELDOR Measurements of Membrane Protein Conformations

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For PELDOR measurements, 15–20 μl of cf-TMD0-His S28C or S138C sample containing 15–20% (v/v) deuterated glycerol was transferred into 1.6 mm outer diameter quartz EPR tubes (Suprasil, Wilmad LabGlass) and quick-frozen in liquid nitrogen. Pulsed EPR data were recorded on an ELEXSYS E580 EPR spectrometer (Bruker), which is equipped with a PELDOR unit (E580-400U, Bruker), a continuous-flow helium cryostat (CF935, Oxford Instruments), and a temperature control system (ITC 502, Oxford Instruments). Measurements were performed at Q-band frequencies (33.4 GHz) using an ELEXSYS SuperQ-FT accessory unit and a Bruker AmpQ 10 W amplifier in a Bruker EN5107D2 cavity at 50 K. The dead-time free four-pulse sequence with phase-cycled π/2-pulse was used for PELDOR measurements36 (link). A 20 ns pump pulse was used, which was placed at the maximum of the echo-detected field swept spectrum. The observer pulse lengths were set to 32 ns (π/2 and π), which were set 70 MHz lower. The deuterium modulations were averaged by increasing the first interpulse delay by 16 ns for 8 steps. The normalized primary PELDOR data V(t)/V(0) were processed to remove background contribution, and the resulting form factors F(t)/F(0) were fitted with a model-free Tikhonov regularization to distance distributions with DeerAnalysis2016 software package37 (link).
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3

EPR Spectroscopy at X-Band

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EPR spectra at X-Band (~9.5 GHz) were acquired on a Bruker ESP-300 spectrometer equipped with an ER/4102 ST resonator (Bruker), an Oxford Instruments continuous-helium-flow cryostat, and an Oxford Instruments temperature controller (ITC 502). For all experiments, quartz tubes with 3 mm inner and 4 mm outer diameters were used (QSI).
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4

CW EPR Spectroscopy of RFQ Samples

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CW X-band EPR spectra of RFQ samples were collected at 10 K at Pennsylvania State University using a Bruker ESP-300 spectrometer (~9.5 GHz) equipped with an ER/4102 ST resonator (Bruker), a continuous flow helium cryostat (Oxford Instruments), and a temperature controller (ITC 502, Oxford Instruments).23 (link) All other CW X-band EPR spectra from 5–30 K (9.62 GHz) were collected at the Ohio Advanced EPR Facility at Miami University using a Bruker EMX instrument equipped with an Oxford Instruments continuous flow helium cryostat and temperature controller (ESR 900). For time-dependent studies of product formation, the temperature was set to 6.67 K to avoid saturation artifacts.17 (link) Spectra were obtained using a microwave power of 20 mW and a modulation frequency and amplitude of 100 kHz and 10 G, respectively. Spin quantitation was carried out using a 250 μM copper(II) azurin standard measured under non-saturating conditions (200 μW).
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5

PELDOR Spectroscopy Methodology

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All PELDOR data were recorded on an ELEXSYS E580 EPR spectrometer (Bruker) equipped with a PELDOR unit (E580–400U; Bruker), a Bruker-D2 resonator for Q-Band frequencies using a 10W Amplifier, a continuous-flow helium cryostat (CF935; Oxford Instruments), and a temperature control system (ITC 502; Oxford Instruments). A dead time–free, four-pulse sequence was used with phase-cycled π/2, electron spin-echo envelope modulation averaging (8 × 16 ns), 20 ns pump, and 32 ns detection pulses (Pannier et al., 2000 (link)).
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6

DEER Spectroscopy of Neuroglobin and MSA236

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All refocused echo experiments on the low spin Fe(III) neuroglobin were carried out using a continuous flow helium cryostat (CF935) and a temperature control system (ITC 502) from Oxford Instruments. This was carried out at 6 K using the observer part of the DEER sequence (Figure 1), π/2τ 1 -π -(τ 1 + τ 2 ) -π -τ 2 -echo with pulse lengths t π/2 = 8 ns and t π = 16 ns for standard pulses and t πcomposite1 = 8+16+8 ns (90 90 180 0 90 90 , Levitt [1]) or t πcomposite2 = 8+16+24 ns (90 0 180 180 270 0 , Shaka [23] (link)) for composite pulses, with inter-pulse delays of τ 1 =198 ns and τ 2 = 954 ns.
Refocused echo experiments on MSA236 were carried out at room temperature (291 K) using the same sequence and pulse lengths as for the neuroglobin, with inter-pulse delays of τ 1 =250 ns and τ 2 = 750 ns.
DEER experiments were carried out on MSA236 at room temperature (291 K) using the four-pulse DEER sequence (Figure 1), π/2(f probe )-τ 1 -π(f probe ) The field swept echo experiment on MSA236 was carried out at 291 K using a Hahn echo sequence, π/2 -τ -π -τ -echo, with 7 and 14 ns π/2 and π pulse lengths and inter-pulse delay τ = 250 ns. The field was swept from 3337 mT to 3367 mT in 0.1 mT steps, with pulse frequency of 93.9996 GHz.
Sequence repetition frequency was 5 kHz, averaging 5,000 shots per point.
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7

Luminescent Europium-Terbium Complexes

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A Mixture of [Eu(tmh)3(MeOH)2] (0.5 g, 0.7 mmol) and [Tb(tmh)3(MeOH)2] (0.5 g, 0.7 mmol) was dissolved in methanol (30 mL). The dpbp ligand (0.39 g, 0.7 mmol) was added to it. Optical measurements: Emission and excitation spectra were measured with a spectrofluorometer (HORIBA Fluorolog-3). Emission quantum yields were estimated using a spectrofluorometer (JASCO FP-6300) with an integrating sphere unit (JASCO ILF-533). The wavelength dependence of the detector response and beam intensity of the Xe light source for each spectrum were calibrated using a standard light source. Emission lifetimes were measured using the third harmonic (355 nm) of a Q-switched Nd:YAG laser (Spectra-Physics, INDI-50, fwhm = 5 ns, λ = 1064 nm) and a photomultiplier (Hamamatsu Photonics, R-5108, response time < 1.1 ns). The Nd:YAG laser response was monitored with a digital oscilloscope (Sony Tektonics, TDS3052, 500 MHz) synchronized to single pulse excitation. Emission lifetimes were determined from the slopes of logarithmic plots of decay profiles. Temperature-dependent emission spectra and emission lifetimes were measured using a cryostat (Thermal Block Company SA-SB245T) and a temperature controller (Oxford Instruments ITC-502S). Diffuse reflection spectra were recorded using a spectrophotometer (JASCO V-670) with an integrating sphere unit (JASCO ISN-723).
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