The largest database of trusted experimental protocols

4 protocols using terbium chloride

1

Analysis of Anaerobic Bacterium C. novyi

Check if the same lab product or an alternative is used in the 5 most similar protocols
All L-amino acids, D-amino acids (except D-histidine), purines, Valine analogs, Terbium chloride (212903), Maltose (M5895), Sodium phosphate dibasic (S7907), o-phthaldialdehyde (P0657), N-acetyl cysteine (A7250), Sodium tetraborate decahydrate (B3545), HPLC grade methanol (34860), 1-Propanol (34871), Trifluoroacetic acid (302031) and Mutanolysin enzyme (M9901) were purchased from Sigma. 2-Propanol (29113-95) was obtained from Nacalai Tesque. D-histidine (sc-255057) was purchased from SantaCruz Biotechnology. Acetonitrile (1.00317) and HCl (1.00029) were purchased from Merck. Percoll (17089109) was purchased from GE Healthcare. Oxyrase for broth was purchased from Oxyrase Inc and Sigma (SAE0013). BBL polypeptone peptone (211910), Dehydrated cooked meat media (226730), Brain heart infusion broth (BHI, 237500) and Reinforced Clostridial medium (RCM, 218081) were purchased from BD. Fetal bovine serum (S1810) was obtained from iDNA Biotechnology.
C. novyi-NT was a gift from the Kinzler-Vogelstein lab in John Hopkins University, USA.
+ Open protocol
+ Expand
2

Fluorescent Metal-DNA Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chemicals. All the DNA samples were from Eurofins (Huntsville, AL, USA). Silver nitrate, terbium chloride and other metal salts were purchased from Sigma-Aldrich (St. Louis, MO, USA) at the highest available purity. Tris(hydroxymethyl)aminomethane (Tris), 2-(N-morpholino)ethanesulfonic acid (MES), and 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid (HEPES) were from Mandel Scientific Inc. (Guelph, ON, Canada).
Fluorescence spectroscopy. All the Tb3+ luminescence spectra were collected using a Fluoromax 4 fluorometer by exciting at 290 nm. Unless otherwise indicated, the DNA concentration was 1 µM for all the experiments, and the Tb3+ concentration was 5 µM. The buffer has been optimized and most experiments were performed in HEPES buffer (pH 7.5).
CD spectroscopy. CD spectra were obtained using a J-715 spectropolarimeter (JASCO, Easton, MD, USA) at 25 °C. The final G7 concentrations was 1 µM. Each measurement was recorded between 320 to 220 nm at a scanning rate of 100 nm·min−1 using a sealed 1-mm path length quartz cuvette. The spectra were collected with a response time of 1 s. The final spectra were the averages of ten measurements. The cell holding chamber was flushed with a constant stream of dry nitrogen gas to avoid water condensation on the cell exterior.
+ Open protocol
+ Expand
3

Fluorescent Oligonucleotide Detection Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All DNA
samples were from Integrated DNA Technologies (IDT, Coralville, IA).
The DNA sequences were A15 (i.e., 5′-AAAAAAAAAAAAAAA);
T15; G15; C15; FAM-A15 (i.e., a carboxyfluorescein label on the 5′-end of A15); FAM-T15; FAM-G15; FAM-C15; FAM-24-mer FAM-ACGCATCTGTGAAGAGAACCTGGG; and c-24-mer: CCCAGGTTCTCTTCACAGATGCGT.
Lanthanum chloride, terbium chloride, lutetium chloride, sodium chloride,
magnesium chloride, sodium dodecyl sulfate (SDS), cetyltrimethylammonium
bromide (CTAB), bovine serum albumin (BSA), Tween 80, adenosine 5′-monophosphate
disodium salt (AMP), and guanosine 5′-monophosphate disodium
salt hydrate (GMP) were purchased from Sigma-Aldrich (St Louis, MO).
2-[4-(2-Hydroxyethyl)piperazin-1-yl]ethanesulfonic acid (HEPES) was
from Mandel Scientific Inc. (Guelph, ON, Canada). 2-(N-Morpholino) ethanesulfonic acid (MES) monohydrate was from Sinopharm
Chemical Reagent Co., Ltd. (Shanghai, China). Milli-Q water was used
for all of the experiments.
+ Open protocol
+ Expand
4

Terbium-Based Spore Detection Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Spore suspensions with a starting volume of 1 ml and an initial concentration of 108 spores/ml were treated with hypochlorite as described above. The neutralised suspensions and the controls were centrifuged to pellet the spores and organic debris, and the supernatant was collected. We then mixed terbium chloride (439657, Sigma Aldrich) into the supernatant solutions at a 1:1 molar ratio to the total amount of DPA in the spores as described by Kocisova et al. [59 (link)], being 10 -4 M terbium in a 3 ml volume for 108 spores. We diluted this mixture by a factor of 10 in deionised water to achieve appropriate optical density 0.1 around the fluorescence excitation wavelength 270 nm. We then measured the fluorescence of 3 ml solutions (n=3 technical replicates) placed in quartz glass cuvettes (6610001200, Agilent Technologies) using a fluorescence spectrophotometer (Cary Eclipse, Agilent Technologies). The solutions were excited at 270 nm with emission measured at 400 - 800 nm. Data was then converted into a numerical format and processed in Origin.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!