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4 protocols using rabbit anti aβ

1

Molecular Profiling of Neuroinflammation and Neurodegeneration

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Western Blot was used to confirm findings from TUNEL assay and IHC. Tissue was lysed in radioimmunoprecipitation assay (RIPA) buffer or mitochondria/cytosol fractions were isolated using a Abcam’s Mitochondria/Cytosol Fractionation Kit (Abcam, ab65320, Cambridge, MA) according to the manufacturer’s instructions. Primary antibodies used and their respective dilutions were as follows: rabbit anti-cleaved caspase 3 (c-cas 3, 1:1000) from Cell Signaling Technology (Danvers, MA); rabbit anti-Iba1(1:1000), rabbit anti-GFAP (1:1000); rabbit anti-Aβ (1:1000); rabbit anti-Tau (1:1000), rabbit anti-p-Tau (1:1000), rabbit anti-brain-derived neurotrophic factor (BDNF, 1:1000), rabbit anti-NF-κB (1:1000), rabbit anti-IkBα (1:1000), rabbit anti-histone 3 (H3, 1:1000), mouse anti-β-actin (1:3000) from Abcam.
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2

Immunohistochemical Analysis of Amyloid and Neuroinflammation in 5xFAD Mice

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The hemibrains were fixed in 0.1 M PBS containing 4% PFA for 48 h and cryopreserved in 30% sucrose in 0.1 M PBS solution for 5 days at 4 °C. Hemibrains were cut at a 50 µm thickness in the coronal plane on a microtome (Microm HM460, Microm Laborgerate S.I., Barcelona, Spain), and sections from heterozygous and homozygous 5xFAD mice and non-transgenic mice were performed as previously described in [51 (link)]. Serial sections were blocked with 5% donkey serum and 0.5% Triton X-100 in 0.1 M PBS for 45 min at room temperature. For plaque amyloid-β analysis, we used rabbit anti-Aβ (1:500, Abcam), rabbit anti-amyloid β1–40 (1:200, ThermoFisher), and rabbit anti-Aβ1–42 (1:500, ThermoFisher). For neuroinflammation analysis, we used rabbit anti-glial fibrillary acidic protein (GFAP; 1:1000, Dako Agilent, Santa Clara, CA, USA) and rabbit anti-Iba1 (1:500, Abcam). Primary antibodies were incubated overnight at room temperature. After rinsing, the sections were incubated with secondary antibody biotinylated goat anti-rabbit (1:500, GE Healthcare, Chicago, IL, USA) for 2 h at room temperature. All antibodies were diluted in PBS, 0.5% Triton X-100, and 2.5% donkey serum (Sigma- Aldrich). We used the peroxidase-conjugated ExtrAvidin method and diaminobenzidine as the chromogen to visualize the reaction product.
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3

Quantification of Amyloid and Neuroinflammation in Mouse Brain

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Left hemisphere of the brains were post-fixed in 4% paraformaldehyde for 48h and cryopreserved in 30% sucrose in 0.1M PBS solution for at 4 °C until processing. Free-floating coronal sections of mouse hypothalamus and hippocampus were selected from −1.22 to −1.94 mm of Bregma levels [110 ]. Serial sections were blocked with 5% donkey serum, 0.5% Triton X-100 in 0.1M PBS for 45 min at room temperature, as previously described [111 (link)]. For plaque amyloid-β analysis, we used rabbit anti-Aβ (1:500, Abcam). For neuroinflammation analysis, we used rabbit anti-glial fibrillary acidic protein (GFAP; 1:1000; Dako) and rabbit anti-Iba1 (1:500, Abcam). Primary antibodies were incubated overnight at room temperature. After rinsing, the sections were incubated with secondary antibody biotinylated goat anti-rabbit (1:500, GE Healthcare) for 2 h at room temperature. All antibodies were diluted in PBS, 0.5% Triton X-100, and 2.5% donkey serum (Sigma-Aldrich, St. Louis, MO, USA). We used the peroxidase-conjugated ExtraAvidin method and diaminobenzidine as the chromogen to visualize the reaction product. Quantification was performed using ImageJ software (http://imagej.nih.gov/ij, accessed on 5 May 2020). Total amyloid plaques were counted using three binarized sections of hypothalamus and hippocampus per animal.
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Immunostaining of Amyloid-Beta in Brain Sections

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The brain sections were rinsed briefly in PBS and treated with 0.5% BSA for 30 min. The sections were incubated with rabbit anti-Aβ (1:500 dilution; Abcam, Cambridge, UK) overnight at 4 °C in the presence of 0.3% Triton X-100 and normal goat serum. They were then incubated for 2 h with an Alexa Fluor conjugated secondary antibody (diluted 1:500). Finally, sections were washed in PBS and mounted using Vectashield mounting medium containing DAPI (Vector Labs, Burlingame, USA). The images were taken using a fluorescence microscope (Olympus Microscope System CKX53; Olympus, Tokyo, Japan). A threshold for positive staining was determined for each image which included all cell bodies and processes but excluded any background staining.
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