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Genegenius automatic gel imaging and analysis system

Manufactured by Syngene
Sourced in United Kingdom

The GeneGenius automatic gel imaging and analysis system is a laboratory equipment designed for capturing, analyzing, and documenting gel electrophoresis images. It provides a streamlined workflow for visualizing and quantifying nucleic acid or protein samples.

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3 protocols using genegenius automatic gel imaging and analysis system

1

Quantifying Gene Expression in Adipose and Liver Tissues

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Total ribonucleic acid (RNA) was extracted from intra‐abdominal adipose tissue or liver tissue using RNAiso Plus Isolation Reagent (TAKARA, Otsu, Shiga, Japan) according to the manufacturer's instructions. Total RNA was reserve transcribed and amplified in a GeneAmp PCR system (Eppendorf, Hamburg, Germany). Primers used in the reverse transcription polymerase chain reaction were of: adipose triglyceride lipase (ATGL; forward TTC AAG TTT CCT TGC AGA GT; reverse CTC CCA AAC TGA CCC TTA AA) in visceral adipose tissue, acetyl‐CoA carboxylase (ACCase; forward GCC AGC AGA ATT TGT TAC TC; reverse AGA CGA TGC AAT CTT ATC CC) in liver tissue, and glyceraldehyde 3‐phosphate dehydrogenase (forward TAT CGG ACG CCT GGT TAC; reverse TGC TGA CAA TCT TGA GGG A). Data analysis was carried out using a GeneGenius automatic gel imaging and analysis system (Syngene, Cambridge, UK), and scanned by densitometry for quantitation. To exclude variations as a result of RNA quantity and quality, the data for genes were adjusted to glyceraldehyde 3‐phosphate dehydrogenase, and the relative expression levels of ATGL and ACCase were calculated as: (relative gray value of the gene / mean of relative gray value in the control) × 100%.
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2

Quantitative Analysis of Gene Expression

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Total ribonucleic acid (RNA) was extracted from BRL‐3A cells, liver tissue, intra‐abdominal adipose tissue or thigh muscle tissue using RNAiso Plus Isolation Reagent (TAKARA, Otsu, Shiga, Japan) following the manufacturer's instructions. Total RNA was reserve transcribed and amplified in a GeneAmp polymerase chain reaction (PCR) system (Eppendorf, Hamburg, Germany); reverse transcription PCR for Tph1, AADC, glycerin‐3‐phosphate acyltransferase 1 (GPAT1), phosphoenolpyruvate carboxykinase‐1 (PEPCK‐1), and glucose transporter 2 (GLUT2) in the liver and BRL‐3A cells, 5‐HT 2A and 2B receptor (5‐HT2AR and 5‐HT2BR) in the BRL‐3A cells, Tph1, AADC and adipose triglyceride lipase in the intra‐abdominal adipose, and Tph1 and AADC in the thigh muscle were carried out in the same system. Data analysis was carried out using a GeneGenius automatic gel imaging and analysis system (Syngene, Cambridge, UK), and scanned by densitometry for quantitation. To exclude variations as a result of RNA quantity and quality, the data for all genes were adjusted to glyceraldehyde 3‐phosphate dehydrogenase. The relative expression levels of each gene were calculated as: (relative gray value of each gene / mean of relative gray value in the control) × 100%. PCR primer sequences are listed in Table1.
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3

RT-PCR Analysis of Inflammatory Markers

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The muscle tissue in six of the eight rats in each group was randomly chosen for RT-PCR assay. Total RNA was isolated from tissues using RNAiso plus Isolation Reagent (TAKARA, Otsu, Shiga, Japan). Total RNA solution was first reverse transcribed and then immediately amplified in a GeneAmp PCR system (Eppendorf). Primers used were NF-κB p65 (forward-GGG ACT ATG ACT TGA ATG CG; reverse-CAG GCT AGG GTC AGC GTA T), IL-1β (forward-GAT GAC GAC CTG CTA GTG T; reverse-CTT CTT CTT TGG GTA TTG TT), TNF-α (forward-TCC AGG CGG TTG CCT ATG T; reverse-GAG CGT GGT GGC CCC), and GAPDH (forward-ATG TAT CCG TTG TGG ATC TG; reverse-GAT GGT ATT CGA GAG AAG GG). The gel was photographed by GeneGenius automatic gel imaging and analysis system (Syngene, Cambridge, UK) and the bands on the film were scanned by densitometry for quantitation. To exclude variations due to RNA quantity and quality, the data for all genes were adjusted to GAPDH.
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