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10 protocols using nembutal

1

Brain Tissue Preparation for Microscopy

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All animal experiments were approved by the Institutional Animal Care and Use Committee of the RIKEN Kobe Institute and Kyushu University. ICR mice (Japan SLC, RRID: MGI: 5652524) were used for in utero electroporation and C57BL/6N mice (Japan SLC, RRID: MGI: 5658686) were used for AAV experiments (age, P56-70; male). To obtain brain tissue, mice were i.p. injected with an overdose of nembutal (Dainippon Sumitomo Pharma) or somnopentyl (Kyoritsu Seiyaku) to produce deep anesthesia, followed by an intracardiac perfusion with 4% paraformaldehyde (PFA) in phosphate buffered saline (PBS). Excised brain samples were post-fixed with 4% PFA in PBS at 4°C overnight. Samples were then embedded in 4% agarose and cut into slices of 220, 500, or 1000 μm thick with a microslicer, PRO7N (Dosaka EM).
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2

Bone Augmentation via Genetic Vectors

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Six- to seven-week-old male rats (F344; Clea, Tokyo, Japan) were anesthetized with an intraperitoneal injection of sodium pentobarbital (15 mg/kg; Nembutal; Dainippon Sumitomo Pharma, Osaka, Japan). During and after surgery, rats were kept warm. Then, GAMs were transplanted to the cranial bone surface under the periosteum of the F344 rats (n=171; 6 rats per group [each group of GFP, BMP4, and Runx2 containing 0.02, 0.1, or 1 mg pDNA, respectively] at each time point [2, 4, and 8 weeks after transplantation], plus 3 rats in Contl group at each time point) as a bone augmentation model (Fig. 2A). At 2, 4, and 8 weeks after transplantation, specimens were harvested to evaluate the efficiency of transfection and new bone formation by histological/immunohistological analysis. Moreover, to confirm the effectiveness of GAM further, critical size of circular calvarial defects (diameter, 9 mm) was created using a saline-cooled trephine drill as a bony defect model, and then individual GAMs were transplanted into the bony defects of male F344 rats (n=18). At 8 weeks of transplantation, specimens were harvested for histological analysis.
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3

Immunostaining of Olfactory Tissues

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Mice were deeply anesthetized with an overdose of Nembutal (Dainippon Sumitomo Pharma) administered by injection, followed by intracardiac perfusion with 4% paraformaldehyde (PFA) in PBS. Dissected OE and OB samples were further fixed in 4% PFA/PBS. Fixed OE–OB samples were decalcified with 0.5 m EDTA for 7 d, cryoprotected in 30% sucrose in PBS overnight, and then embedded in optimal cutting temperature compound. Cryostat sections (16 μm thick) were collected on glass slides and fixed with 4% PFA/PBS for 15 min. In the anti-Neuropilin 1 (Nrp1) immunostaining, sections were treated with 10 mm citrate buffer, pH 6.0, at 120°C, for 20 min for antigen retrieval. Blocking of sections was performed with 5% donkey normal serum. The primary antibodies used in this study were goat anti-Nrp1 [1:100; catalog #AF566, R&D Systems (RRID:AB_355445)], goat anti-Kirrel2 [1:100; catalog #AF2930, R&D Systems (RRID:AB_2130975)], and chicken anti-GFP [1:500; catalog #GFP-1010, Aves Labs (RRID:AB_2307313)]. Alexa Fluor 488-conjugated donkey anti-chicken IgY [catalog #703-545-155, Jackson ImmunoResearch (RRID:AB_2340375)] and Alexa Fluor 555-conjugated donkey anti-goat IgG [catalog #A-21432, Thermo Fisher (RRID:AB_2535853)] were used as secondary antibodies at 1:200 to 1:250. DAPI (Thermo Fisher) was used at 1:1000.
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4

Fasting Blood Glucose and HbA1c Measurement in Diabetic Rats

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All rats fasted for 20 hours, followed by measurements of their body weights. The rats were placed under anesthesia by isoflurane inhalation (Forane ® , Abbott Japan, Tokyo, Japan) and intraperitoneally injected with heparin sodium (1000 units; Novo Heparin Injection 5000 ® , Mochida Pharmaceutical, Tokyo, Japan). After 30 minutes, the rats were euthanized with an introperitoneal injection of excess sodium pentobarbital (Nembutal ® , Dainippon Sumitomo Pharma, Osaka, Japan), the thorax was opened, and mouse was closed. Blood was collected from the left ventricle with a syringe (5-mL Terumo Syringe ® , Terumo, Tokyo, Japan), and fasting blood glucose and hemoglobin A1c (HbA1c) levels were measured.
Fasting blood glucose levels were measured in rat serum samples with the HK-G-6-PDH (Quick Auto Neo GLU-HK, Sino Test, Tokyo, Japan) 7 according to instructions of the manufacturer. Sera were obtained by centrifugal separation of the collected blood samples. In this study, the DM group n = 10 GK rats) was expected to have fasting blood glucose levels of > 150 mg/dL, as reported by Goto and Kakizaki. 6 HbA1c levels were measured by latex agglutination (RAPIDIA ® , AUTO HbA1c-L, Fujirebio, Tokyo, Japan) 8 according to the National Glycohemoglobin Standardization Program guidelines.
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5

Isolation and Culture of Mouse Hepatocytes

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Cultures of mouse hepatocytes were prepared as previously described [23 (link)]. Briefly, C57BL/6 male mice or Nrf-2 deficient mice (B6/SJL background), 6–8 weeks old, were anesthetized with Nembutal (Dainippon Sumitomo Pharma, Japan) intraperitonealy and their livers were perfused with 40 ml of Liver Perfusion Medium (Gibco, Grand Island, NY) followed by 30 ml of Liver Digestion Medium (Gibco), both at a flow rate of 5 ml/min. Hepatocytes were dispersed in Hepatocyte Wash Medium (Gibco) supplemented with 1 % penicillin/streptomycin by dissection and gentle shaking. After filtration through a 100 μm nylon mesh filter, hepatocytes were purified by repeated centrifugation (three times) at 50 × g for 2 min. A typical yield was about 4–5 × 107 hepatocytes/mouse with >80 % cell viability as determined by trypan blue exclusion assay. The purity of hepatocytes was determined by flow cytometry (FACSCanto II, BD Bioscience, San Jose, CA). Hepatocytes and non-hepatocytes were separated based on cell size using forward scatter (FSC) and side scatter (SSC). Data were analyzed with Diva Software (BD Bioscience), and 85 % of the cells were found to be hepatocytes. The isolated hepatocytes were resuspended in DMEM (Gibco) supplemented with 10 % FBS, and 1 % penicillin/streptomycin, and cultured in type-1 collagen-coated 12-well plates at a cell density of 2 × 105 cells/well.
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6

Mandibular Gland Fixation and Capsule Removal

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Under isoflurane inhalation anesthesia (Forane ® , Abbott Japan, Tokyo, Japan), heparin sodium (1000 units; Novo Heparin Injection 5000 ® , Mochida Pharmaceutical, Tokyo, Japan) was administered via intraperitoneal injection. After a 30-min resting period, animals were euthanized with an intraperitoneal injection of sodium pentobarbital (Nembutal ® , Dainippon Sumitomo Pharma, Osaka, Japan). We inserted a cannula through the left ventricle and into the ascending aorta, and infused physiological saline into the ascending aorta. The right atrium of the heart was then drained from its blood. Following this procedure, a physiological saline solution, containing a 2.5% (W/V) glutaraldehyde solution (Kishida Chemical, Osaka, Japan) and a 2% paraformaldehyde solution (Formaldehyde Solution ® , Kishida Chemical), was in-fused into the ascending aorta. The mandibular glands were then harvested and fixed by soaking in the same solution at 4°C for 24 h. The specimens were washed with an ultrasonic cleaner (UT-105HS ® , Sharp, Osaka, Japan) and the cleaned specimens were used to evaluate the effectiveness of different techniques to remove the capsule from the acinus portion of the mandibular glands.
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7

Histopathological Analysis of Embolized Kidneys

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After follow-up angiography, the rabbits were euthanized using pentobarbital (Nembutal, Dainippon Sumitomo Pharma Co., Ltd., Tokyo, Japan), and their embolized kidneys were removed. The specimens were fixed in 10% formalin, embedded in paraffin, cut into 3.5 µm sections, and stained with hematoxylin–eosin for microscopic examination. Pathological images were captured using an Olympus IX83 microscope (Olympus).
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8

Perfusion and Cryosectioning of Rat Brains

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The animals were anesthetized with a lethal dose of sodium pentobarbital (Nembutal, Dainippon Sumitomo Pharma, Osaka, Japan; P28 and P56 animals, 100 mg/kg, i.p.) and transcardially perfused with ice-cold 0.01 M phosphate buffer (PB) for 2 min, followed by 4% paraformaldehyde and 0.2% picric acid in 0.1 M PB, pH 7.4, for 10 min. The brains were dissected and postfixed overnight in the same fixative at 4°C. They were then cryoprotected by incubation in 15% sucrose for 7 h followed by 30% sucrose for 20 h at 4°C. The brains were then frozen in O.C.T. compound (Tissue-Tek, Sakura Finetek, Tokyo, Japan) by freezing in dry ice-cold normal hexane. Serial 40 μm coronal sections were prepared on a cryostat (CM-1900, Leica, Wetzlar, Germany) at −20°C. Every section at the level of the PFC was collected and placed in ice-cold phosphate-buffered saline (PBS).
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9

Pulmonary Ligation in Murine Lung Cancer Model

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A total of 66 7‐week‐old mice were divided into two groups of 51 (group 1) and 15 (group 2) mice, and were pretreated with NNK (2 mg/0.1 mL saline; mouse i.p.)4 at weeks 0 and 1 (Figure 1). At week 3, the 51 mice of group 1 underwent left pulmonary ligation. The left lung, but not the right, was chosen for ligation because the left lungs of mice consist of one lobe and a prominent pulmonary hilum. The procedure was as follows. Each mouse was given an i.p. injection of 0.2 mL pentobarbital sodium (Nembutal, Dainippon Sumitomo Pharma Co., Osaka, Japan) diluted 10 times (0.06–0.1 mL/10 g body weight). Under deep anesthesia, a skin incision (approximately 7 mm long) was made in the left axilla. After confirmation of the location of the thoracic wall, thoracotomy was completed with an incision (approximately 5 mm long) between the ribs16 (Figure 2a). The left lung was observed directly through this incised opening to confirm atelectasis. The left pulmonary hilum was tied up using a clipping device, Hemoclip manual‐load appliers (No. 17‐085‐01, Mizuho Corp., Tokyo, Japan) and Hemoclip‐cartridge (No. 17‐088‐01; Mizuho Corp.). Finally, the opened chest wall was clipped to close the thorax. The experiment was terminated after 12 weeks and all mice of each group were killed under deep anesthesia.
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10

Spleen Implantation of Colon Cancer Cells in Mice

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The process was referenced in the previous study [30 (link)]. Log-phase cells were harvested with 0.05% trypsin–0.02% EDTA in MC38 cells Hanks Balanced Salt Solution (HBSS), washed three times with PBS, and suspended in PBS at a final concentration of 5*107 cells/ml. The C57BL/6 mice were anesthetized with an intraperitoneal injection of pentobarbital (Nembutal, Dainippon Sumitomo Pharma Co., Ltd., Osaka) regulated to 75 mg/kg. Then the mice were incised about 10 mm on the left subcostal, the spleen was confirmed under the peritoneum, the peritoneum was opened for about 8 mm, and the spleen was exposed over the peritoneum. Next, a needle injected the cell suspension of 5*106/100ul of human colon cancer cells into the spleen. After 5 min, the spleen was resected, the peritoneum was sutured with one stitch, and the wound was closed with a clip [31 (link)]. The mice were killed two weeks after inoculation with tumor cells, and the liver sample was resected for evaluation. The tumor sections were paraffin-embedded and preserved for immunohistochemical analysis. All mice experiments were performed with the approval of the Animal Ethics Committee of Tongji University (approval number: SHDSYY-2021-2965a).
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