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7 protocols using pnp palmitate

1

Lipase Activity Assay Protocol

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Lipases were purchased from Sigma-Aldrich Corporation (St. Louis, Mo, USA): Lipase PS from B. cepacia (Amano) and Palatase from R. miehei (Novozymes). Gum arabic, pNP-palmitate (pNPP), and p-nitrophenol (pNP) were purchased from Sigma-Aldrich Corporation. All other chemicals used in the present study were of analytical or better grade without further purification.
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2

Cloning and Purification of Erythrobacter seohaensis Esterase

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Erythrobacter seohaensis SW-135 was kindly provided by Prof. Jung-Hoon Yoon and cultivated in marine broth 2216 (BD DifcoTM, United States) at 30°C (Yoon et al., 2005 (link)). Kits for genomic DNA isolation, DNA purification, and plasmid isolation were purchased from Omega (United States). DNA polymerase was purchased from TaKaRa (China) and T4 DNA ligase and restriction endonucleases were purchased from New England Biolabs (United States). Plasmid pSMT3 (Herrmann et al., 1996 (link)) was stored in our lab and used as the vector for gene cloning and sequencing as well as protein expression. Escherichia coli BL21 (DE3) was used for protein expression. E. coli strains were grown at 37°C in Lysogeny broth (LB) medium containing 10 g/L NaCl, 10 g/L tryptone, and 5 g/L yeast extract (BD DifcoTM, United States), pH 7.0, supplemented with kanamycin (50 μg/mL) when required. Ni Sepharose (GE Healthcare, United States) was used to purify the His6-tagged protein. p-Nitrophenyl (NP) acetate (C2), p-NP butyrate (C4), p-NP caprylate (C8), p-NP decanoate (C10), p-NP laurate (C12), p-NP myristate (C14), and p-NP palmitate (C16) were purchased from Sigma–Aldrich (United States) and p-NP hexanoate (C6) was purchased from TCI (Japan).
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3

Heterologous Expression of Lipolytic Enzymes

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Escherichia coli DH5α (Biomed, Beijing, China) was used for propagation of plasmids, and P. pastoris GS115 (his4) was used for protein expression. Trizol reagent (Invitrogen, Carlsbad, USA) and Oligotex mRNA Midi Kit (Qiagen, Dusseldorf, Germany) were used for total RNA extraction and mRNA purification. BD SMART™ RACE cDNA Amplification Kit was purchased from Clontech (Palo Alto, CA, USA). Ex Taq DNA polymerase, PrimeSTAR HS DNA polymerase, restriction endonucleases, and pMD18-T were purchased from TaKaRa (Tokyo, Japan). T4 DNA ligase was purchased from New England Biolabs (Ipswich, MA, USA). The Pichia pastoris expression kit was obtained from Invitrogen (Carlsbad, USA). p-Nitrophenol (pNP), pNP acetate (pNPA), pNP butyrate (pNPB), pNP hexanoate (pNPH), pNP caprylate (pNPC), pNP decanoate (pNPD), pNP laurate (pNPL), pNP myristate (pNPM), and pNP palmitate (pNPP) were purchased from Sigma Chemical Co. (St. Lous, MO, USA). pNP hexanoate (pNPH) was obtained from HEOWNS Company (Tianjin, China). Olive oil, soybean oil, and peanut oil were purchased from a local market. All other chemicals used were of analytical grade unless otherwise stated.
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4

Lipase Activity Spectrophotometric Assay

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Lipase activity was assayed spectrophotometrically using pNp-palmitate as a substrate. The reaction buffer was composed of 50 mM Tris-HCl pH 8, 1 mg/mL Arabic gum, 0.005% of Triton X-100, and 3.9 mM pNp-palmitate (Sigma). Strains were grown in dendritic cell media to A600 of 1. 5 mL of supernatant was concentrated using concentrator tubes (Thermo Fisher Scientific) for a final volume of one ml. Samples were incubated at 30ºC in the dark for 15 min, and absorbance was read at 410 nm.
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5

Enzymatic Activity of Est10 on pNP Esters

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Six p-nitrophenyl (pNP) esters of fatty acids with different chain lengths were obtained from Sigma-Aldrich: pNP acetate (C2), pNP butyrate (C4), pNP decanoate (C10), pNP dodecanoate (C12), pNP myristate (C14) and pNP palmitate (C16). Each enzymatic reaction contained 100 mM sodium phosphate buffer pH 8.0, 4 mg/ml Triton, 0.8 mM of each pNP ester dissolved in acetonitrile:isopropanol mix (80:20 v/v) and 50 nM of purified Est10.
One unit of enzyme activity (U) was defined as the amount of enzyme required to release 1 μmol of p-nitrophenol per minute. The production of p-nitrophenol was continuously monitored at 405 nm in a Varioskan Flash (Thermo Scientific) during 15 min at 40°C. The activity of the enzyme was calculated by measuring the initial reaction rate. The data were collected in triplicates and a blank reaction without enzyme was included for each substrate.
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6

Characterization of Esterase Enzymes

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E. coli DH5α (TaKaRa, Japan) and BL21 (DE3) (Novagen, USA) were used as cloning and expression hosts, respectively. The vector pGEX-6P-1 (GE Healthcare, USA) was used for gene cloning and protein expression. Serratia sp. and E. coli were grown in LB medium (tryptone 1 %, yeast extract 0.5 % and NaCl 1 % w/v) at 28 and 37 °C, respectively. p-nitrophenyl esters: p-NP acetate (C2), p-NP butyrate (C4), p-NP hexanoate (C6), p-NP caprylate (C8), p-NP laurate (C12) and p-NP palmitate (C16) were all purchased from Sigma (St. Louis, MO, USA).
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7

Lipase Activity Assay via pNP-Palmitate

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For assessment of the lipase activity, pNP-palmitate (Sigma Aldrich) was used as a substrate. Ten mM pNP-palmitate stock solution was prepared in isopropanol and diluted in 100 mM potassium phosphate buffer, pH 6.5. The reaction was performed in 1 mL reaction mixtures containing 900 μL of 0.2 mM pNP-palmitate in 100 mM potassium phosphate buffer, pH 6.5, and 100 μL of culture supernatant at 40 °C. The release of p-nitrophenol was spectrophotometrically quantified by following the absorbance at 410 nm for 30 min with a 2 min interval and calculation according to [26] .
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