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5 protocols using ab109263

1

Intestinal Tumor Protein Analysis

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Intestinal tumor tissue was adequately homogenized on ice in a mixture of RIPA, PMSF, and protease inhibitors. Centrifugation was spun at 13 000 rpm to collect the supernatant containing total protein. Protein concentration was measured using detergent compatible protein assay (BIO‐RAD, Hercules, CA). Then, 40 mg of protein was separated by 5% upper gel and 12% lower gel and transferred onto polyvinylidene difluoride membranes (GE Healthcare, Piscataway, NJ). The primary anti‐β‐catenin (ab32572, Abcam,1:5000), ZO‐1 (33‐9100; Thermo Fisher Scientific, 1:1000), Claudin‐3 (34‐1700; Thermo Fisher Scientific, 1:1000), Occludin (PA5‐30230; Thermo Fisher Scientific, 1:1000), PCNA (13 110; Cell Signaling, 1:2000), Cyclin D1 (2922; Cell Signaling, 1:1000), PCYT2 (A15309, ABclonal, 1:1000) and PCYT1α (ab109263, Abcam, 1:1000) were applied. Secondary antibodies were horseradish peroxidase conjugated anti‐rabbit or anti‐mouse. Chemiluminescence signals were detected by the ECL detection kit. The intensity of Western blotting images was determined by Image J.
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Protein Extraction and Western Blot Analysis

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Protein extraction from maternal liver and immunoblotting were performed as in [28 (link)] using primary antibodies specific for MTHFD1 [41 (link)], methyleneTHF reductase (MTHFR) [42 (link)], methionine synthase (MTR) (Proteintech 25896-1-AP; ThermoFisher, Waltham, MA, USA), betaine-homocysteine methyltransferase (BHMT) [43 (link)], phosphate cytidylyltransferase 1A, choline (PCYT1A) (ab109263, Abcam), choline kinase alpha (CHKA) (Invitrogen PA5-109529, ThermoFisher), phosphatidylethanolamine N-methyltransferase (PEMT) (Invitrogen PA5-42383; ThermoFisher), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (2118, Cell Signaling Technology, Danvers, MA, USA, VINCULIN (13901, Cell Signaling Technology), and ACTIN (A2066; Sigma-Aldrich, St. Louis, MO, USA). The extraction buffer contained protease inhibitors (Pierce, ThermoFisher) as well as phosphatase inhibitors (ThermoFisher) to preserve protein phosphorylation. Imaging and quantification of the blots was done using the Amersham Imager 600 (GE Healthcare Life Sciences, Marlborough, MA, USA) analysis software v1.0.0.
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3

Immunofluorescence Staining of PCYT1A and Lipid Droplets

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Cells were fixed with 4% paraformaldehyde for 15 min and permeabilised with 0.5% TritonX-100 for 10 min prior to blocking with 3% BSA for 1 h at room temperature (RT). Immunostaining with PCYT1A primary antibody (ab109263, Abcam) at 1:100 dilution was performed at 4°C overnight and was followed by washing with PBS and incubation with Alexa Fluor 594 or 647-conjugated secondary antibodies at 1:1000 dilution for 1 hour at RT. After washing with PBS, lipid droplets were stained with BODIPY 493/503 at 1:1000 dilution for 30 min at RT. Cells were mounted on microscope slides with ProLong Gold Antifade Mountant with DAPI.
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4

Immunohistochemical Analysis of PCYT1A

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Tibial and femoral growth plate sections of 15-day old wild type C57BL/6J mice and Mtp knockout livers of adult mice were provided by Prof. Graham R. Williams (Imperial College London, UK) and Prof. Mahmood Hussain (SUNY Downstate Medical Center, USA), respectively. Retinal, liver and white adipose tissue sections were obtained from 10 weeks old C57BL/6 wild type mice. Harvested mouse tissues were fixed with 4% paraformaldehyde and embedded with paraffin. Tissues were sectioned at 4 μm and subjected to heat-induced antigen retrieval with sodium citrate buffer at 97°C for 20 min for subsequent PCYT1A immunostaining. PCYT1A primary antibody (ab109263, Abcam) was used at 1:10-1:100 dilution and Alexa Fluor 594 or 647-conjugated secondary antibodies (ThermoFisher) were used at 1:250-1:500 dilution. Tissues were mounted with ProLong Gold Antifade Mountant.
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5

Immunohistochemical Staining of Laryngeal Lesions

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Specimens of laryngeal carcinomas and benign lesions were removed and fixed in 4% paraformaldehyde (PFA) in phosphate-buffered saline (PBS) overnight at 4 °C, embedded in paraffin and sectioned at 4 μm. Deparaffiisation, hydration and epitope demasking were carried out with a microwave antigen retrieval procedure in sodium citrate buffer for 5 min. Then sections were treated with 3% H2O2 for 20 min to quench endogenous peroxidase activity and blocked with 5% bull serum albumin (BSA) for 20 min. The primary antibody used were goat anti-rabbit anti-CCTα (1:50, ab109263, Abcam, Cambridge, UK). Slides stained with primary antibodies were incubated at 4 °C overnight. Then the slides were incubated with an anti-rabbit IgG antibody at room temperature for 30 minutes. The binding of the primary antibody to the sections was visualized by using DAB Substrate-Chromogen Solution (Dako Cytomation, Carpinteria, CA, USA), the sections were then counterstained with hematoxylin (Beyotime Biotechnology).
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