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4 protocols using extra page one precast gel 5 20

1

Western Blot Analysis of XRCC4 and PAXX

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Preparation of total cell lysate and western blot analysis were carried out as previously described [31 , 36 (link), 37 (link)] with the following modifications: The total proteins were electrophoresed on Extra PAGE One Precast Gel 5–20% (Nacalai Tesque, Kyoto, Japan, 13064‐64); the molecular weight marker used was a 3‐Color prestained XL‐ladder (APRO Science, Tokushima, Japan, SP‐2140); and the membranes were blocked in Blocking One (Nacalai Tesque, 03953‐95) or ECL Prime Blocking reagent (GE Healthcare Bio‐Sciences. Corp., Piscataway, NJ, USA, RPN418) for 30 min at room temperature. The following antibodies were used: goat anti‐XRCC4 polyclonal antibody (C‐20; Santa Cruz Biotechnology, Santa Cruz, TX, USA, sc‐8285), anti‐C9orf142 (PAXX) polyclonal antibody (Abcam, Cambridge, UK, ab126353), rabbit anti‐GFP polyclonal antibody (FL; Santa Cruz Biotechnology, sc‐8334), and mouse anti‐β‐actin monoclonal antibody (AC‐15; Sigma‐Aldrich, St. Louis, MO, USA, A5441). In accordance with the manufacturer's instructions, protein bands were detected using a Select Western Blotting Detection System (GE Healthcare Bio‐Sciences. Corp., RPN2235) or Chemi‐Lumi One Ultra (Nacalai Tesque, 11644‐40), and visualized using the ChemiDoc XRS System (Bio‐Rad, Hercules, CA, USA).
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2

Western Blot Analysis of Protein Markers

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Cell pellet and tumour fragments were lysed in lysis buffer (0.1 M Tris–HCl pH 7.5, 10% glycerol and 1% sodium dodecyl sulfate), boiled for 5 minutes and centrifuged for 10 minutes (15,000 rpm). All protein concentrations were determined by BCA Protein Assay Reagent (Pierce, Rockford, IL, USA). Each cell lysate (10 μg) was electrophoresed on Extra PAGE One Precast Gel 5–20% (Nacalai Tesque) and transferred onto PVDF membrane (Millipore Corp., Billerica, MA). After blocking with 5% skim milk (Megumilk, Tokyo, Japan) or 5% bovine serum albumin (Nacalai Tesque), the membrane was treated with primary antibodies to podoplanin (FL-162; Santa Cruz Biotechnology, CA, USA), EGFR (phospho Y1068) (Abcam, Cambridge, MA, USA), GAPDH (Millipore), β-actin (clone, AC-15, Sigma-Aldrich), EGFR and pErk (Cell Signaling Technology, Boston, MA, USA). After treating with an ECL Prime Western Blotting Detection reagent (GE Healthcare), we used LAS-3000 mini (Fujifilm, Tokyo, Japan) to detect chemiluminescence signals.
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3

Western Blot Analysis of γH2AX Protein

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Total protein extraction and western blot analysis were performed according to our previously described methods [11 (link), 17 (link)] with the following modifications. The total proteins were electrophoresed on Extra PAGE One Precast Gel 5–20% (Nacalai Tesque, Kyoto, Japan) or Super Sep ACE Gel 5–20% (Wako Pure Chemical). The fractionated products were electrophoretically transferred onto Hybond-P membranes (GE Healthcare Bio-Sciences Corp., Piscataway, NJ, USA). Then, the membranes were blocked in Blocking One (Nacalai Tesque) for 60 min at room temperature and incubated with mouse anti-γH2AX monoclonal antibody (JBW301) (Upstate Biotechnology Inc., Charlottesville, VA, USA) or mouse β-actin monoclonal antibody (Sigma-Aldrich). After washing, the membranes were incubated with the anti-mouse IgG HRP-Linked Whole Ab (from sheep) (NA931) (GE Healthcare Bio-Sciences Corp.) for 60 min at room temperature. Immunoblotting was performed using Select Western Blotting Detection System (GE Healthcare Bio-Sciences Corp.). Protein bands were visualized using ChemiDoc XRS system (Bio-Rad).
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4

Western Blot Analysis of Ku70/Ku80 and GFP

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The preparation of total protein extracts and western blot analysis was conducted as previously described55 (link)–57 (link), with some modifications. Specifically, the total proteins (50 μg per lane) were separated on an Extra PAGE One Precast Gel 5–20% (Nacalai Tesque). Subsequently, the membranes were blocked with Blocking One (Nacalai Tesque) for 30 min at room temperature. The following antibodies were employed: mouse anti-Ku70 monoclonal antibody (E-5, Santa Cruz Biotechnology, Santa Cruz, TX, USA), mouse anti-Ku80 monoclonal antibody (B-4, Santa Cruz Biotechnology), rabbit anti-GFP polyclonal antibody (FL, Santa Cruz Biotechnology), and mouse anti-β-actin monoclonal antibody (AC-15, Sigma-Aldrich, St. Louis, MO, USA). Secondary antibodies used included anti-mouse IgG, horseradish peroxidase (HRP)-linked whole antibody from sheep (GE Healthcare Bio-Sci. Corp., Piscataway, NJ, USA) or anti-rabbit IgG, HRP-linked whole antibody from donkey (GE Healthcare Bio-Sci. Corp.). Protein bands were detected following the manufacturer's instructions using Chemi-Lumi One Ultra (Nacalai Tesque) and visualized with the ChemiDoc XRS System (Bio-Rad, Hercules, CA, USA). The 3-Color prestained XL-ladder (APRO Science, Tokushima, Japan) served as the molecular weight marker.
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