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189 protocols using mrs agar

1

Osmotolerance of Lactobacillus Strains

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To assess effects of osmolarity, 3 μl of o/n culture of each Lactobacillus strain was transferred onto plates with MRS agar (Merck, Germany) and MRS agar containing: 0.34 mol/L (2%), 0.69 mol/L (4%), 1 mol/L (6%), or 1.36 mol/L (8%) (w/v) NaCl (Sigma, USA) and incubated at 37°C for 48 hr. The survival of bacteria was examined visually by comparison of their growth efficiency on MRS agar with their growth on MRS agar with different concentrations of NaCl. Each strain was tested in two independent experiments.
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2

Viable Counts of Lactobacillus Products

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In order to assess the viable counts declared on the label, 1 g of all products was accurately weighed and resuspended in 9 mL of Maximum Recovery Diluent (MRD, Sigma-Aldrich, Milan, Italy), serially diluted and plated on different media following the manufacturer instructions, accordingly to Istituto Superiore di Sanità (ISTISAN) 2008/36: 35–63 and ISO 20128:2006. Media were selected on the basis of the Lactobacillus spp. composition of products. MRS agar (DeMan Rogosa Sharpe, BD, Difco, Milan, Italy) was used for the total viable count, MRS agar supplemented with 0.1 and 10 µg/mL clindamycin and ciprofloxacin was used for the enumeration of L. crispatus and L. gasseri, and MRS agar supplemented with 10 µg/mL vancomycin was used for the selection of L. rhamnosus and L. reuteri (for all antibiotics, Sigma-Aldrich, Milan, Italy) [17 ]. The inoculated plates were incubated at 37 °C for 72 h under anaerobic conditions. Viable counts were performed in triplicate for all considered conditions.
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3

Isolation and Characterization of Lactic Acid Bacteria

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Amount of 25 g of each sample was aseptically weighted and homogenized with 225 ml of sodium citrate using a stomacher (Seward Stomacher 400 Circulator, UK). Samples were subsequently diluted (1:10) using sterile peptone water and 0.1 ml from each dilution was sub-cultured on Man Rogosa and Sharpe (MRS) agar (Merck, Germany) used for isolating lactic acid bacteria [6 ]. Plates were incubated at 30°C and 37°C for mesophilic lactic acid bacteria and at 42°C for thermophilic lactic acid bacteria for 48 h. MRS agar plates were incubated anaerobically using the gas pack systems (Anaerocult C, Merck, Germany). To differentiate homo- and heterofermentative strains, all the isolates were tested for gram reaction, catalase production, and carbohydrates fermentation (homofermentatives showed ribose +, sorbitol +, raffinose ±, lactose +, galactose +, maltose +, melibiose ±, rhamnose −, xylose ±, manose +, salicine +, sorbose +, glucose +, and sucrose + pattern, heterofermentatives showed ribose +, sorbitol ±, raffinose ±, lactose ±, galactose ±, maltose +, melibiose ±, rhamnose ±, xylose −, manose +, salicine ±, sorbose ±, glucose +, and sucrose±pattern). Cimon citrate test was also conducted as a differential test [7 ,8 ].
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4

Quantifying Lactic Acid Bacteria in Yogurt

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Further analyses included the determination of the lactic acid bacteria population in yogurt using the standard plate method, in two parallel replicates for each analysis and three independent replications for each experiment. MRS agar (Merck, Germany) was used to determine the lactobacilli counts, and M17 agar (Merck, Germany) was applied to determine the streptococci counts. The plates of MRS agar were incubated at 37 °C for 72 h under anaerobic conditions (Anaerocult A, Merck, Germany). Plates of M17 agar were incubated at 37 °C for 72 h under aerobic conditions. After incubation, the number of bacteria was converted into colony-forming units in mL (CFU/mL) and expressed as log CFU/mL.
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5

Preparation and Characterization of Crimped Kernel Maize Silage

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The CKMS was prepared as described by Ranjitkar et al., 2016a (link), Ranjitkar et al., 2016b (link)). In short, crimped kernel maize was ensiled for 8 weeks by adding a mixture of organic acids including formic acid, propionic acid, benzoic acid and ammonium formate (Kemira AIV Pro, Helsinki, Finland). The CKMS was vacuum-packed and stored at −20 °C. Concentration of DM, pH and microbial counts (coliforms, lactose negative enterobacteria and lactic acid bacteria [LAB]) were analysed as described by Engberg et al. (2004) (link). In short, DM was analysed following freeze-drying of samples at −50 °C, coliforms and lactose negative enterobacteria were enumerated on MacConkey agar (Merck KGaA Darmstadt, Germany) incubated at 38 °C for 24 h, and LAB were counted on MRS agar (Merk KGaA, Germany) incubated in an anaerobic cabinet at 38 °C for 48 h. Crude protein (N × 6.25) in CKMS was determined using the Dumas combustion method (Helrich, 1990 ). Ash was analysed according to the method described by Helrich (1990) and fat was extracted with diethyl ether after acid hydrolysis (Stoldt, 1952 ). Short chain fatty acids (SCFA) and lactic acid were analysed as described by Canibe et al. (2007) (link). Starch, non-starch polysaccharides (NSP) and lignin were analysed using the methods described by Bach Knudsen (1997) .
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6

Isolation and Identification of Plantago major

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Erythromycin (Sigma), Anaerocult® C Merk, Gas Pack (Merck, Darmstadt, Germany), MRS broth (De Man et al., 1960 ), sodium citrate, peptone water, and MRS Agar were purchased from Merk company (Merck, Darmstadt, Germany). Sodium alginate was provided by Sigma Company (Sigma, Steinheim, Germany). The Plantago major seed was provided by Ahura Med, Marvdasht, Fars, Iran. It was collected from growing plants in Pasargad city, Fars province (South of Iran). Further plant identification was performed by the herbarium of the Fars Research Center for Agriculture and Natural Resources (FRCANR), Shiraz, Iran. A voucher specimen is deposited in the herbarium of the FRCANR, Shiraz, Iran.
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7

Quinoa Fermentation with Lactobacillus

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Quinoa (Chenopodium quinoa Willd) was provided by the Gansu Academy of Agriculture Science (Lanzhou, China). Lactobacillus plantarum NO.1−16 were isolated from human intestinal flora. GABA, MRS agar, and Monosodium L-glutamate (MSG) were purchased from Sigma Aldrich, Inc. (Shanghai, China). All chemicals are analytical grade unless otherwise stated.
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8

Isolation and Purification of LAB Cultures

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LAB from the samples was isolated as described by Rajoka et al. [15 (link)]. Briefly, the samples were serially diluted (10−1 to 10−3) with peptone water (Thermo Fisher Scientific, Carlsbad, CA, USA) and inoculated on de Man-Rogosa Sharpe (MRS) agar (Sigma-Aldrich, St Louis, MO, USA). The inoculated plates were incubated in anaerobic jars at 37°C for 48 h. Single colonies that grew were randomly selected, and each colony was inoculated in 5 mL of MRS broth (Sigma-Aldrich, St Louis, MO, USA) which was then incubated at 37°C for 48 h. The cultures were then streaked on MRS agar and incubated at 37°C for 48 h. Pure isolates were obtained and maintained at -80°C on MRS agar slants containing 40% glycerol pending further experiments.
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9

Freeze-dried Lactobacillus gasseri ATCC 19992

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Freeze-dried granules of Lactobacillus gasseri ATCC 19992 ™ were acquired from the American Type Culture Collection (ATCC, Manassas, VA, USA). Sodium alginate, Tween® 80, calcium chloride, de Man Rogosa and Sharp Medium (MRS), MRS agar, Gram stain kit, and all the reagents used to perform the in vitro evaluation were purchased from Sigma-Aldrich® (St Louis, MO, USA). The commercial vegetable oil used in this study was bought from a local market in Veracruz (Mexico).
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10

Isolation and Characterization of Lactobacillus Strains from Broiler Digestive Tracts

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The different lactobacilli were isolated from the digestive tracts (ileum and cecum) of 16 antibiotic-free healthy broiler groups of different ages (four levels), breeds (four species) and diet formulas (four levels), as well as from 10 antibiotic-treated commercial broilers (Table 3). Experiments coded from 1 to 16 corresponded to the antibiotic-free broiler group, the “A”-coded experiment represents the group of antibiotic-treated commercial broilers, and the sample origin was designated as “i” for ileum and “c” for cecum. Samples of the ileum or cecum content of each category were homogenized at a ratio of 1:10 (10 g of ileum or cecum content in 90 mL of buffered peptone water (Scharlau-Chemie, Barcelona, Spain)). The homogenate was diluted 107-fold and 0.1 mL was plated onto de Man, Rogosa and Sharpe (MRS) agar (Sigma-Aldrich, Burlington, MA, USA). The plates were incubated anaerobically for 3 to 4 days at 37 °C. In total, 210 randomly selected strains were first characterized by Gram staining, motility and the detection of catalase activity. Gram-positive, catalase-negative bacilli were presumptively considered as Lactobacillus for further identification. Isolates were preserved in MRS broth with 20% glycerol at −70 °C until further use. All strains were revivified by successive streaking on MRS agar prior to performing any assay.
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