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32 protocols using rtx 5ms column

1

GC/MS Analysis of Volatile Compounds

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GC/MS was accomplished by a model GC/MS-QP2010 instrument (Shimadzu, Tokyo, Japan), equipped with an RTX-5MS column (30 m × 0.25 mm internal diameter). The carrier gas was helium, the flow rate was 1 mL/min, the injection volume was 1.0 µL, and the injector temperature was set at 200 °C. The temperature was initially increased at 3 °C/min until it reached 240 °C, then at 10 °C/min to 280 °C, where it was maintained for 10 min. The volatile oil constituents were identified by reference to the NIST 11 Mass Spectral Library (NIST11/2011/EPA/NIH) and by comparing their retention indices (RIs) with authentic mass spectra [32 (link)]. The RIs were calculated by co-injection with a mixture of C8_C32 hydrocarbons (Sigma-Aldrich, St Louis, MO, USA) and using the Van den Dool and Kratz equation [32 (link)]. The relative percentage of the compounds within the volatile essential oil were obtained by area normalisation.
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2

GC-MS Analysis of Xylella fastidiosa

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Culture pellet residue from X. fastidiosa 9a5c grown in XFM medium was obtained as above for GC-MS analysis, which was performed using capillary gas chromatography (GC) connected to an electron ionization mass spectrometric detector (EI-MS; GC-2010 equipped with a GCMS-TQ8030; at 70 eV, Shimadzu) with a RTx-5 MS column (5% diphenyl and 95% dimethylpolysiloxane; 30 m × 0.25 mm i.d × 0.25 µm film thickness). Helium was used as carrier gas. The carrier gas inlet pressure was regulated for a constant flow of 1.4 mL min−1. GC was carried out with a temperature-programmed injection as follows: 150 °C raised by 5 °C min−1 to 280 °C, and isotherm for 10 min. The injection was split and its temperature was 250 °C. The interface temperature was 280 °C. Injection volume was 1.0 μL solution in methanol. Scanning speed was 0.3 scan s−1 from m/z 50 to 700. Identification of the components was made by determination of their retention indices relative to those of a homologous series of n-alkanes (C10−C24) [29 (link)], by comparison with fragmentation patterns in mass spectra with those stored on the spectrometer database (the NIST Mass Spectral Library 11.0) and bibliography [30 ].
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3

Carbohydrate Characterization by GC-MS

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The aqueous (EA), polysaccharide (P-EA), and low Mw (S-EA) extracts were hydrolyzed with 1 M trifluoroacetic acid (TFA) at 100 °C for 14 h, and the solution was evaporated with nitrogen flow. Afterwards, the samples were sequentially washed with acetone (1 mL) and ethanol (1 mL), followed by evaporation. The samples were reduced with sodium borohydride solution (2 mg/mL, pH 9.0), at room temperature for 14 h, and later they were treated with cationic resin (20 mg) until reaching pH 5.0. The solution was evaporated to dryness and the resulting boric acid was removed by addition of methanol followed by evaporation (3×). The acetylation process was performed using acetic anhydride-pyridine (200 µL; v/v) at room temperature for 14 h. The resulting alditol acetates were extracted with acetone and analyzed by GC–MS (Shimadzu) using rtx5-ms column (30 m × 0.25 mm) programmed to raise the temperature from 50 °C to 250 °C, at a rate of 10 °C/min.
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4

Detailed Characterization of Neem Extract

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The GM-MS method was used to conduct a qualitative and quantitative characterization of neem extract, using the model (GC–MS-QP2010-Ultra) from Shimadzu Company, Japan, with a capillary column Rtx®-5MS column (30 m, 0.25 mm, 0.25 µm) [64 (link)]. The split mode was used for sample injection, and operated in electron ionization (EI) mode at 70 eV, inflow rate of 1.69 ml/min. Helium gas was used as carrier gas. The injector temperature was set at 300 °C, the temperature of the ion source was 200 °C, and 250 °C was used as interface temperature. The oven temperature program was as follows: the initial temperature at 50 °C rising at 7 °C /min to 180 °C, then the rate changed 10 °C/min reaching the final temperature at 280 °C with 2 min as hold time. In a total 22 min run, the sample was analyzed by the scan mode in a range of 40 to 500 m/z charges to ratio. The neem extract's components were identified by comparing the retention times and mass fragmentation patents with the National Institute of Standards and Technology (NIST) library, and then the results were recorded [65 , 66 (link)].
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5

GC-MS Analysis of Organic Compounds

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The mass spectra were recorded with a Shimadzu GCMS-QP2010 (Tokyo, Japan) equipped with a split–splitless injector and Rtx-5MS column (30 m × 0.25 mm i.d. × 0.25 µm film thickness) (Restek, Bellefonte, PA, USA). The capillary column was attached to a quadrupole mass spectrometer (SSQ 7000; Thermo-Finnigan, Bremen, Germany). The initial temperature of the column was set to 45 °C for 2 min and programmed to 300 °C at a rate of 5 °C/min; then, it was kept constant at 300 °C for 5 min. The injector temperature was 250 °C. The flow rate of the carrier gas (helium) was 1.41 mL/min. The mass spectra were recorded according to the following conditions: filament emission current (equipment current), 60 mA; ionization voltage, 70 eV; ion source, 200 °C. Diluted samples (1% v/v) were injected via the split mode (split ratio: 1:15) [33 (link)].
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6

Chemometric Analysis of AALEO Bioactives

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The chemical composition and characterization of the bio-active compounds from the essential oil of AALEO was analyzed by gas chromatography (GC) and GC-mass spectrometry (GC-MS) using a SHIMADZU QP2010 with a RTX5 MS column (30 m, film 0.25 μm, ID 0.25 mm). The temperature of the column was programmed from 45 to 270°C at 5°C min-1, the injector and detector temperatures for the analysis were 250°C. Helium was used as the carrier gas at a flow rate of 1.5 ml min-1. The identification of chemical constituents was performed on the basis of retention indices (RI) determined with reference to a homologous series of n-alkanes, under identical experimental conditions, co-injected with standards (RESTEK, 110 Benner Circle, Bellefonte, PA, USA), followed by MS library search (WILEY8.LIB and NIST08.LIB Version; Mdoe et al., 2014 (link)).
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7

Fatty Acid Analysis of C. elegans

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Analyses of the fatty acid composition of C. elegans were done as described previously (Watts and Browse, 2002 (link)). Briefly, 200 adult C. elegans were collected with M9 buffer and washed three times. After centrifugation, M9 buffer was removed with a pipette and replaced with 1 mL 2.5% H2SO4 in methanol to extract fatty acids from tissues and then to carry out their transmethylation. Samples were capped and incubated for 1 h at 80°C. After the addition of 0.2 mL hexane and 1.5 mL water, fatty acid methyl esters were extracted into the hexane layer by shaking and centrifugation of the tubes at low speed. Aliquots (1 μL) of the organic phase were analyzed by GC using a gas chromatograph (QP2010 series; Shimadzu, Kyoto, Japan) equipped with a RTX-5MS column (30 × 0.25 mm). Mass conditions: EI source (70 ev), dual-filament, scanning range (50–500 m/z), scan interval 1.0 s. Helium was the carrier gas (injected at 1.4 mL/min), and a flame ionization detector was employed. The gas chromatograph was programmed at an initial temperature of 120°C for 1 min, followed by an increase of 10°C/min to 190°C, followed by an increase of 2°C/min to 200°C. The mass spectra of the peaks identified as palmitic acid, palmitoleic acid, oleic acid, and stearic acid matched the spectra presented by W. W. Christie on the lipid library website1.
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8

Enantioselective Epoxidation of Alkenes

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The asymmetric epoxidation of alkenes over the Ti-Beta-TEAOH and normal Ti-Beta was carried out under the following conditions: 0.2 g catalyst, 10 mL acetonitrile, substrate/H2O2 (35% in aqueous solution) = 1, 70 °C, 2 h. The products were identified by a Shimadzu GCMS-QP 2010 Ultra instrument equipped with a Rtx-5MS column and/or comparing with standard (2S,3S) and (2R,3R)-epoxide. Enantioselectivities were determined by chiral GC (Shimadzu, GC-2010 Plus) equipped with a CP-Chirasil-Dex CB column.
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9

GC-MS Analysis of KD5040 Compounds

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To analyze the compounds in KD5040, we performed GC, equipped with an Rtx-5 ms column (30 m × 0.25 mm × 0.25 μm) and a mass spectrometer (GCMS-QP5000 series; Shimadzu, Japan). The carrier gas was hydrogen at a flow rate of 3 mL/min. The column temperature was initially at 40 °C for 1 min, then increased gradually to 300 °C at 10 °C/min. Extracts were diluted 1:10 (v/v) with ethanol, and 1 μL of the diluted samples was injected automatically in split mode. Injector and detector temperatures were set at 230 °C and 280 °C, respectively.
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10

Fennel Essential Oil Composition Analysis

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The chemical composition of the essential fennel oil was determined by gas chromatography-mass spectrometry system (GC-MS-QP 2010, Shimadzu, Japan), equipped with a flame-ionization detector (FID) with a Rtx-5MS column (30 m × 0.25 mm, 0.25 μm thickness). The essential oil (10 μL) was dissolved in acetone (100 μL) and 1 μL of the solution was injected into the GC/MS system with the following properties: helium was the carrier gas, used at a flow rate of 1 mL/min; split mode (1:25), with 1 μL (1/10 in acetone, v/v) as the injected volume and 300 °C as the injection temperature. The mass spectra of the obtained compounds were matched with those in the NIST11 library (Gaithersburg, MD, USA) [27 (link)].
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