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19 protocols using penicillin

1

Culturing Breast Cancer Cell Lines

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The human breast cancer cell lines MCF-7 and MDA-MB-231 were obtained from the Korea Cell Line Bank (KCLB, Seoul, Korea). Both cell lines were grown in Dulbecco’s Modified Essential Medium (DMEM; HyClone, Logan, UT, USA) supplemented with 10% fetal bovine serum (FBS; HyClone), 100 U/mL of penicillin, and 100 μg/mL of streptomycin (HyClone), and were maintained at 37 °C in a humidified incubator containing 5% CO2. We used breast cancer cell lines up to 15 passages after purchasing cell lines from KCLB and the cell lines were authenticated by the KCLB and showed >90% similarity in a short tandem repeats (STR) DNA fingerprint profile when compared with the American Type Culture Collection (ATCC) and Korean Cell Line Bank (KCLB) databases. Cells were plated at a density of 1 × 106 cells in 10-cm culture dishes. To establish primary mammospheres, single-cell suspensions of MCF-7 and MDA-MB-231 cells were seeded at a density of (3.5∼4) × 104 and (0.5∼1) × 104 cells/well, respectively, in ultralow attachment six-well plates containing 2 mL of complete MammoCultTM medium (StemCell Technologies; Vancouver, BC, Canada), which was supplemented with 4 μg/mL of heparin, 0.48 μg/mL of hydrocortisone, 100 U/mL of penicillin, and 100 μg/mL of streptomycin. The cells were incubated for seven days in a 5% CO2 incubator at 37 °C.
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2

Establishment of Mammosphere Cultures from MCF-7 Cells

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Human breast cancer cells, MCF-7, were obtained from the American Type Culture Collection (ATCC; Manassas, VA, USA). MCF-7 cells were grown in Dulbecco’s Modified Essential Medium (DMEM; Hyclone, Logan, UT, USA) with 10% fetal bovine serum (FBS; Hyclone), 100 U/ml penicillin, and 100 μg/ml streptomycin (Hyclone). Cells were maintained at 37 °C in a humidified incubator with 5% CO2. To establish primary mammospheres, MCF-7 cells were seeded at a density of 3.5–4 × 104 cells/well in ultra-low attachment 6-well plates containing 2 ml of complete MammoCult™ medium (StemCell Technologies, Vancouver, BC, Canada) which was supplemented with 4 μg/ml heparin, 0.48 μg/ml hydrocortisone, 100 U/ml penicillin, and 100 μg/ml streptomycin. To establish secondary mammosphere, primary mammosphere was collected into individual conical tubes by gentle centrifugation at 1000 rpm for 1 min. After removal of supernatant, cell pellet was trypsinized with 1X EDTA/Trypsin, followed by replating a single cell suspension at a density of 4 × 104 cells/well in ultra-low attachment 6-well plates containing 2 ml of complete MammoCult™ medium [7 (link)]. In 5 days, the number and size of the mammosphere were assessed compared with control. The same procedure was repeated for tertiary mammospheres [7 (link)].
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3

Drug Resistance Assays in Breast Cancer

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For the MDR assays, daunorubicin (DNR, Sigma-Aldrich, St. Louis, MO) and cyclosporine A (CsA, Sigma-Aldrich) were dissolved in dimethyl sulfoxide (DMSO, Sigma-Aldrich) to make stock solutions of 350 μM and 1 mM, respectively. Working solutions of 35-μM DNR and 5-μM and 10-μM CsA were prepared by diluting stock solutions in Hanks’ Balanced Salt Solution (HBSS, Invitrogen Corp., Grand Island, NY). Working solutions of 1-μM Oregon Green-labeled paclitaxel (OG-PTX) and 10-μM CsA were prepared by diluting stock solutions in a similar fashion. Post-assay cell viability was tested using 0.4% trypan blue solution (ThermoFisher Scientific, Waltham, MA).
The MDA-MB-231 breast cancer cell lines were obtained from cryopreserved storage. The cells were maintained in Hyclone Dulbecco’s Modified Eagle Medium (DMEM)/High Glucose (GE Life Science, Marlborough, MA) with 10% fetal bovine serum (FBS, Life Technologies, Grand Island, NY) and 1% penicillin (Stemcell Technologies, Vancouver, BC) at 5% CO2 and 37 °C. The doubling time for the cell lines was ~38 h; hence, growth medium was changed three times a week and cells were passaged every 72 h.
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4

Culturing Human and Mouse Immune Cells

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Human LSCs were cultured in StemSpan™ Serum-Free Expansion Medium II (STEMCELL, USA) with penicillin (100 U/mL), streptomycin (100 mg/mL), stem cell factor (SCF, 20 ng/ml), thrombopoietin (TPO, 20 ng/ml), Flt3-L (20 ng/ml), IL-3 (10 ng/ml), and IL-6 (10 ng/ml). Mouse LSCs were cultured in Iscove’s Modified Dulbecco’s Media (Thermo Fisher Scientific, USA) with 10% fetal bovine serum (FBS), penicillin (100 U/mL), streptomycin (100 mg/mL), SCF (20 ng/ml), TPO (20 ng/ml), Flt3-L (20 ng/ml), IL-3 (10 ng/ml), and IL-6 (10 ng/ml). Human and mouse ILC1s or NK cells were cultured in RPMI 1640 (Thermo Fisher Scientific, USA) with 10% FBS, penicillin (100 U/mL), streptomycin (100 mg/mL), IL-12 (10 ng/ml), and IL-15 (100 ng/ml). The mouse AML cell line C1498 (American Type Culture Collection) was cultured in RPMI 1640 with 10% FBS, penicillin (100 U/mL), and streptomycin (100 mg/mL). Cultures were incubated at 37°C in a humidified atmosphere of 5% CO2. All cytokines were from PeproTech. penicillin and streptomycin were from Thermo Fisher Scientific.
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5

Cell Line Establishment and Authentication

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Standard cell lines U-251 MG, T98G, U-87 MG, LN-18, SF268, and GP2 were cultured in DMEM media (Sigma-Aldrich) supplemented with 10% FBS, 100 U/mL penicillin, and 100 μg/mL streptomycin (Gibco). DNA fingerprinting was performed for authentication of the cell lines (data available upon request). Human GBM tumorspheres H543, H516, and H676 were cultured in human NeuroCult NS-A Proliferation Kit (Stem Cell Technologies, Catalog No. 05751) and supplemented with 10 ng/mL recombinant human EGF (Gibco, Catalog No. PHG0313), 20 ng/mL basic-FGF (Sigma-Aldrich, Catalog No. F0291–25UG), 1 mg/mL heparin (Stem Cell Technologies, Catalog No. 07980), 100 U/mL penicillin, and 100 μg/mL streptomycin. Cells were incubated at 37°C, 5% CO2 with humidity. Both established and GBM tumorsphere lines were kindly provided by Eric Holland. All the cell lines were routinely checked for Mycoplasma contamination by PCR analysis.
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6

Tumorsphere Formation and Paclitaxel Response

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For tumorsphere formation, cells were grown in MammoCultTM Human Medium supplemented with MammoCultTM Proliferation Supplement (StemCell Technologies, Vancouver, BC, Canada), 50 U/mL penicillin, 50 mM streptomycin, 4 µg/mL heparin (StemCell Technologies, Vancouver, BC, Canada) and 0.48 µg/mL hydrocortisone (StemCell Technologies, Vancouver, BC, Canada). Cells were plated in 24-well ultra-low attachment plates (Corning, Corning, NY, USA) at a density of 6000–20000 cells per well, depending on the cell line, and cultured for 5 days. To test the effect of paclitaxel, tumorspheres were treated with DMSO or 0.1 µM paclitaxel and they were collected after 48 h. The number of tumorspheres was quantified using an inverted microscope (Olympus, Tokyo, Japan).
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7

Establishment of 3D Tumor Organoids

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3D organoid models were established as previously reported [32 (link)]. Briefly, approximately 1 cm3 of fresh tumor tissue was cut, soaked in PBS containing 5% penicillin–streptomycin and other antibiotics (2% Primocin, Invitrogen) for 30 min, and then minced. Enzymolysis of minced tissues was performed with 1.5 mg/mL collagenase IV (Catalog No. 7426, STEMCELL, British Columbia, Canada) for 1 h at 37 °C. Cells were washed twice with advanced DMEM/F12 and filtered through a 40-µm cell strainer (Catalog No. 27305, STEMCELL). After centrifugation at 1000 rpm for 5 min, the cells were inoculated into Matrigel (Catalog No. 356235, Corning, New York, USA) and overlaid with a human IntestiCult™ organoid growth medium (Catalog No. 06010, STEMCELL) containing 10 µM Y-27632, 1% Primocin and 1% penicillin–streptomycin. TrypLE™ Express Enzyme (Catalog No. 12604021, Thermo Scientific) was used to digest and resuspend the cells for organoid passaging.
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8

Evaluating Metallic and ZnO Nanoparticle Toxicity on THP-1 Cells

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The human monocyte THP-1 cell line (ATCC TIB-202) was used to evaluate the toxicity levels of metallic- and ZnO-NPs as well as the combination of both NPs. THP-1 cells were grown as monocytes in RPMI medium supplemented with heat deactivated 10% fetal calf serum (Hyclone, GE, IL, USA), and a mixture of penicillin (100 μg/mL) and streptomycin (100 U/mL) (StemCell, Vancouver, BC, Canada). THP-1 cells were incubated at 37°C in a humid atmosphere of 5% CO2. Cells (1x104 cells/well) were activated the night before of the experiment by the addition of 40 ng/mL phorbol myristate acetate (PMA, Sigma). The next day, the medium was aspirated and replaced with fresh media without antibiotics and exposed to the NPs for 24 h using the same incubation temperature as stated above. Thereafter, 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium (MTS, Promega, WI, USA) was added to the wells and the optical density of the plates was read at 450 nm using a plate reader (Epoch, Tecan, Männedorf, Switzerland). Staurosporine (1 μg/mL, Sigma) and untreated cells were used as positive and negative controls, respectively. The cytotoxic activities were performed without exposure to the light to mimic the environment once the NPs are penetrating into the body.
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9

Mammosphere Formation Assay

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Single cells were plated on ultralow attachment 6 well tissue culture plates (Costar, Catalog No 3471) at a density of 10000 cells/ml and cultured in serum-free mammary epithelial basal medium media (Lonza, Walkersville, MD, Catalog No CC-3150) supplemented with 20 ng/mL EGF (Chemicon, Catalog No EA140), 5 μg/mL insulin (Sigma-Aldrich, Catalog No 15500), 1 μg/mL hydrocortisone (Stem Cell Technologies, Catalog No 07904), 20 ng/mL bFGF (Invitrogen; Catalog No 13256), B27 (Invitrogen; Catalog No 17504), 4 μg/mL hePARin (Stem Cell Technologies, Catalog No 07980), 100 IU/mL penicillin, and 100 μg/mL streptomycin (Stem Cell Technologies, Catalog No 07500). Cells were fed every three days by adding additional media to wells. After 7days, diameters and numbers of aggregated cell spheres were measured using Celigo Cytometer (Cyntellect, San Diego, CA).
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10

Culturing Various Human Cell Lines

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Normal human dermal fibroblasts (NHDF) and HEK293T cells were obtained from ATCC and cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% heat-inactivated fetal bovine serum (FBS) (HyClone), 100 units/ml penicillin, 100ug/mL streptomycin and 100ug/mL glutamine (ThermoFisher). Human aortic endothelial cells (hAEC) (CC-2535; Lonza) were cultured in EBM-2 basal medium with EGM-2 SingleQuots supplement excluding Heparin (Lonza), as well as 10% FBS, penicillin, and streptomycin. Kasumi-3 cells were obtained from ATCC and maintained in RPMI 1640 with 20% FBS and penicillin, streptomycin, and glutamine. M2-10B4 and S1/S1 stromal cells were obtained from Stem Cell Technologies and maintained in DMEM with 10% fetal bovine serum and penicillin, streptomycin, and glutamine. All cells were maintained at 37°C and 5% CO2.
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