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17 protocols using assay buffer

1

Quantifying Glucose and Lactate Levels

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Glucose consumption and lactate production were determined by glucose assay kit and lactate assay kit, respectively. In short, cells were collected, and then fully suspended in assay buffer (Abcam, Cambridge, UK). Then, the supernatant was collected by centrifuging. Samples were purified using Deproteinizing Sample Preparation Kit (Abcam). Following that, assay buffer (Abcam), probe (Abcam) and enzyme mix (Abcam) were added, and glucose uptake and lactate production were assessed with a microplate reader (BioTek).
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2

Catalase Activity Assay of A. fumigatus Conidia

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Crude protein extracts were prepared from A. fumigatus swollen conidia incubated for 6 h in CD medium and treated with 2 mM of H2O2 for 45 min. Conidia were harvested by centrifugation and washed thoroughly with PBS. Conidia were re-suspended in assay buffer (Abcam, Cambridge, UK) and disrupted by FastPrep treatment, repeated mixing and sonication for 10 min to enhance the solubilization of proteins. Protein concentration was determined by the Bradford assay [28 (link)] and spectrophotometric measurements (UV mini 1240, Shimadzu, Kyoto, Japan). Catalase activity was determined using the catalase activity assay kit (cat. No. ab83464 Catalase Activity Assay Kit, Abcam, Cambridge, UK) according to the manufacturer’s instructions and fluorometric measurements in a fluorescence plate reader (Tecan, Männedorf, Switzerland) at excitation and emission wavelengths of 535 and 587 nm, respectively.
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3

Quantifying Alkaline Phosphatase Activity

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hMSCs seeded in 12-well plates were lysed with the assay buffer (Abcam, Paris, France). The protein contents in the lysates were determined using the Bradford protein assay (Sigma). Ten microliters from the remaining lysate was mixed with 20 μl of MUP, used as a substrate (Abcam) in a 96-well plate, and incubated at room temperature for 30 min. Fluorescence intensity was measured at extension/emission of 360/440 nm. The alkaline phosphatase (ALP) activity was normalized to protein content and expressed as unit per microgram protein.
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4

Quantifying Lysyl Oxidase Activity in Osteoblasts

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To measure lysyl oxidase (LOX) activity, supernatants were obtained 7 days after the induction of MSCs to OBs. The LOX assay reaction solution is a mixture of 20 μl Amplite™ HRP substrate stock solution (Abcam), 20 μl HRP (50 U/ml, Abcam), and 5 ml assay buffer (Abcam). A total of 50 μl supernatant and 50 μl LOX assay reaction solution were added to 96 wells. After incubation at 37 °C for 20 min in the dark, fluorescence was measured at Ex/Em = 540/590 using a microreader (Tecan, Maennedorf, Switzerland).
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5

Sensitive Fe2+ Quantification Assay

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Based on the protocol summary of Fe2+ assay, the samples were placed into 96-well plates. Each well was added with 5 µL assay buffer (Abcam, Cambridge, MA, USA) and incubated for 30 min at 37°C. Then, 100 µL Iron Probe (BioAssay Systems, CA, USA) was added to each well containing the Iron Standard and test samples and incubated for 1 h at 37°C protected from light. The absorbance at 593 nm was analyzed immediately with a colorimetric microplate reader (Bio-Rad Laboratories, Shanghai, China).
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6

Quantifying Cellular Glutamine and α-KG

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glutamine uptake and α-KG production were determined by glutamine and α-KG assay kits (Abcam, Cambridge, UK), respectively. In brief, cultured cells were harvested and then suspended in assay Buffer (Abcam). After that, samples were centrifuged at 9000 rpm for 12 min, and supernatant was collected. Perchloric acid (Abcam) and potassium hydroxide (Abcam) were used to incubate with supernatant, respectively. After performing centrifugation at 12,000 rpm for 12 min, supernatant was collected and analyzed with the microplate reader (Thermo Fisher) with the wavelength at 450 nm for glutamine uptake assay or at 570 nm for α-KG production assay.
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7

Measuring Cellular Tyrosinase Activity

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The cellular tyrosinase activity were measured using tyrosinase Activity Assay Kit (Abcam, Cambridge, UK) and a slight modification of a previously reported method [40 (link)]. B16-F10 cells were seeded in 60 mm dishes (2 × 105 cells/dish) for 24 h and treated with CFS (0.5 and 1% (v/v)) or arbutin (200 µM) for 40 h in the presence or absence of 200 nM α-MSH, harvested by trypsinization, sonicated in assay buffer (Abcam, Cambridge, UK), and centrifuged at 12,000 rpm for 20 min. The protein concentration was determined by the Pierce™ BCA Protein Assay Kit (Thermo Fischer Scientific). The reaction mixture consisting of 20 µg protein and 80 µL of 2 mg/mL L-DOPA (in 0.1 M sodium phosphate buffer, pH 6.8) was added to each well of a 96-well plate. After incubation at 37 °C for 1 h, the optical density at 492 nm was measured using a microplate reader.
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8

Apoptosis Analysis Using Flow Cytometry

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For apoptosis analysis, 1 × 106 cells were isolated and resuspended in 1% FBS containing RPMI 1640. Cells were treated with 1 μM LPS for 30 min. After treatment, cells were centrifuged at 500g for 5 min at 4°C. After discarding the supernatant, cells were resuspended in 200 μl of assay buffer (Abcam), 2 μl of Apopxin green indicator (100× stock) to measure apoptotic cells, and 1 μl of CytoCalcein-450 (200× stock) to measure healthy cells. Then, cells were incubated at room temperature for 40 min without washing, and the binding of Apopxin green indicator was quantified at excitation/emission = 490/525 nm and CytoCalcein-Violet 450 at excitation/emission = 405/450 nm by flow cytometry (Sony SA38000).
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9

Quantifying Glutamate Production

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Glutamate production was detected with glutamate assay kit (Abcam). Briefly, cells were collected when their confluence reached about 80%. Then, harvested cells were incubated with lysis buffer (Abcam) for 15 min. After that, Assay buffer (Abcam), Enzyme mixture (Abcam) and NADP Stock Solution (Abcam) were mixed with lysates. Finally, samples were analyzed with the microplate reader (Thermo Fisher) with the wavelength at 570 nm.
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10

Cytokine and Cellular Damage Measurement

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Culture supernatants were collected 2 to 3 times a week and kept at − 80 °C until the assays were performed. All experiments were performed according to the manufacturers’ protocols. In brief, released IL-1β, IL-6, and TNFα were measured from undiluted supernatants using commercially available V-Plex rat ELISA kit (Meso Scale Discovery, Rockville, MD), and electroluminescent signals were detected by MESO QuickPlex (Meso Scale Discovery, Rockville, MD). Lower detection limit of the kit was 6.92 pg/ml for IL-1β, 13.8 pg/ml for IL-6, and 0.72 pg/ml for TNFα. Lactate dehydrogenase (LDH) was measured using LDH assay kit (BioVision, Milpitas, CA). The culture supernatants were diluted two- to threefolds with the assay buffer (BioVision), and colorimetric signals were measured at 450 nm by a microplate reader FlexStation 3 (Molecular Devices, San Jose, CA). LDH concentrations were calculated from the level of LDH activity that converts NAD to NADH. The concentration was expressed as milliunits per milliliter, in which 1 U of LDH generates 1 μM NADH per minute. Goat immunoglobulin G concentration in culture supernatants was measured using the competitive inhibition IgG ELISA kit (Cusabio, College Park, MD). The detection range of the kit was 0.146 to 37.5 μg/ml.
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