Topspin version 3
TopSpin version 3.2 is a software application developed by Bruker for the acquisition, processing, and analysis of nuclear magnetic resonance (NMR) data. It serves as the core software platform for Bruker's NMR instrumentation, providing a comprehensive set of tools and functionalities for researchers and scientists working in the field of NMR spectroscopy.
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34 protocols using topspin version 3
NMR Spectroscopy of Metabolites in D2O
NMR Analysis of Polysaccharide Samples
1H NMR experiments were acquired at 25 +/- 0.1 °C using a mono-dimensional standard pulse-program with 32k data points over a 10 ppm spectral width, accumulating 128 scans. The spectra were weighted with 0.2 Hz line broadening and Fourier-transformed. The transmitter was set at the water frequency, which was used as the reference signal (4.79 ppm).
To obtain 13C spectra with adequate signal-to-noise ratio, all data were acquired using distortionless enhancement by polarization transfer (DEPT). DEPT experiments were collected at pulse angle of 3π/4 at 25 ± 0.1 °C, accumulating a number of scans > 16,384. The transmitter was set at the ethanol frequency which was used as the reference signal (17.47 ppm). All mono-dimensional proton NMR spectra were obtained in quantitative manner using a total recycle time to ensure full recovery of each signal (5 x Longitudinal Relaxation Time T1).
NMR-based Determination of Pectin Methylation
The degree of methyl-esterification (DM) values was determined by 1H-NMR spectroscopy, integrating the hydrogen areas corresponding to -CH3 at 3.9 ppm, H-1 (5.1–5.3 ppm), H-5 of unesterified α-D-GalAp units at 4.7 ppm, and H-5′ of esterified α-D-GalAp units at 5 ppm, as discussed by Grasdalen, Bakøy, and Larsen [21 (link)]. The hydrogen from -CH3 around 3.9 ppm gives DM, using H-1 integral as reference [22 (link)]. Nevertheless, the H-1 signal of Gal-A units is very near the H-1 of arabinogalactan. The DM % is also determined by the ratio of -CH3 using (H-5 + H-5′) integrals or from the ratio H-5′/(H-5 + H-5′) with a relatively good accordance.
NMR Spectroscopy of Polysaccharide Characterization
The samples were solubilized in D2O and the chemical shifts of the polysaccharide were expressed as δ (ppm), using the resonances of -CH3 groups of acetone ( 1 H at δ 2.22; 13 C at δ 30.20) as internal references. The data were collected and processed using the Software TOPSPIN, version 3.1 (Bruker Biospin, Rheinstetten, Germany).
Complementary 1 H NMR measurements were performed at 353 K on a Bruker AVANCE I instrument equipped with a 5 mm probe operating at 400.2 MHz. An amount of 3 mg of polymer was dissolved in 0.5 mL of D2O, and 32 scans were recorded. Chemical shifts are expressed using H2O at 4.25 ppm at 80 °C as reference.
The values of degree of methyl-esterification (DM) were determined by 1 H-NMR spectroscopy integrating the hydrogen areas corresponding to H-1, H-5 of unesterified α-D-GalAp units and H-5 of esterified α-D-GalAp units as discussed by Grasdalen, Bakøy, & Larsen, 1988 (link). The hydrogen from -CH3 around 3.76 ppm gives DM using H-1 integral as reference (Patova et al., 2019) (link).
NMR Spectroscopy of Glycosidic Compound
NMR Structural Characterization Protocol
HRMS and 2D NMR Characterization Protocol
NMR Spectroscopy of G-Quadruplex RNA
NMR Study of VIN3 Proteins Binding to Histone H3
Nuclear Magnetic Resonance Spectroscopy Protocol
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