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9 protocols using h class system

1

High-pH Reversed-Phase Liquid Chromatography-Based Peptide Separation

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The peptide mixture was separated into 10 fractions by high-pH RPLC using ethylene bridged hybrid (BEH) C18 columns (1.7 µm, 1.0 mm × 150 mm) attached to the H-class system (Waters). The second-dimensional liquid chromatography separation of the peptides was conducted on an Ekspert nano LC 415 instrument (AB Sciex, Toronto, Canada). The peptides were eluted using 2% acetonitrile with 0.1% formic acid as buffer A and 98% acetonitrile with 0.1% formic acid as buffer B with a gradient of 100 min. The eluted peptides were subsequently analyzed using a TripleTOF 5600+ mass spectrometer (AB Sciex). Data were obtained in positive ion mode. For the TOF-MS scan, the mass range was set as 350–1500 m/z. The MS/MS scan was carried out with a mass range of 100–1500 m/z.
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2

UPLC-MS/MS Analysis of Metabolites

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The samples were separated using an ACQUITY UPLC BEH C18 Column (2.1 × 50 mm, 1.7 µm, Waters) on an LC system (ACQUITY H‐Class System, Wnters). The LC mobile phase consisted of (C) water containing 0.1% (v/v) formic acid and (D) acetonitrile. The gradient program was isocratic at 10% D, Initial; linear 1at 0%–85% D, 0–15 min; isocratic at 100% D, 15–16 min; and isocratic at 100% D, 16–20.5 min. The injection volume of each sample was 5 µl, and the flow rate was 0.2 ml min. The isolated samples were detected using a tandem quadrupole MS (Xevo TQ‐S, Waters) in the Multiple Reaction Monitoring (MRM) mode. The MRM conditions for the respective compounds are listed in Table S1.
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3

Quantitative Analysis of RPV and M3RPV

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Drug quantitation was performed on a Waters ACQUITY ultra-performance liquid chromatography (UPLC) H-Class system with TUV detector and Empower 3 software (Milford, MA). RPV and M3RPV samples were separated on a Phenomenex Kinetex 5 μm C18 column (150 × 4.6 mm) (Torrance, CA). RPV was detected at 285 nm, using a mobile phase consisting of 65% 50 mM KH2PO4, pH 3.2, and 35% ACN and a flow rate of 1.0 mL/min. M3RPV was detected at 230 nm, using a mobile phase consisting of 90% ACN and 10% H2O and a flow rate of 1.0 mL/min. Drug content was determined relative to peak areas from drug standards (0.05–50 μg/mL) in MeOH.
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4

Solubility Determination of CAB and MCAB

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The solubilities of CAB and MCAB in water and 1-octanol were determined by adding excess drug to each solution at room temperature then mixing for 24 h. Samples were centrifuged at 20,000 × g for 10 min to pellet insoluble drug. The supernatants containing solubilized drug were vacuum-dried then re-dispersed in methanol for drug concentration measurement using a Waters ACQUITY ultra performance liquid chromatography (UPLC) H-Class System with TUV detector and Empower 3 software (Milford, MA, USA). CAB and MCAB samples were separated on a Phenomenex Kinetex 5 µm C18 column (150 × 4.6 mm) (Torrance, CA) using either 65% 5.0 mM KH2PO4, pH 3.2/35% ACN or 90% ACN/10% water with a flow rate of 1.0 mL/min and detected at 254 and 230 nm, respectively. Drug content was quantitated by comparison of peak area to those of known standards (0.05–50 µg/mL in methanol).
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5

UPLC-PDA Kinetic Analysis Protocol

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Kinetic analyses were performed using a Waters acquity ultra performance liquid chromatography (UPLC) H-Class system with photodiode array (PDA) detector. Instrument control and data processing were performed using Empower software. acquity UPLC BEH C18 column, 2.1×50 mm with a 1.7 µm size particle was used. A mixture of MeOH:H2O with a gradient of 5:95 → 95:5 over 5 min was used as mobile phase. Calibration showing linear fitting was obtained (Supplementary Figure 11). See supplementary information for more details, including chromatograms (Supplementary Figures 1213).
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6

Solubility Determination of CAB and MCAB

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The solubilities of CAB and MCAB in water and 1-octanol were determined by adding excess drug to each solution at room temperature then mixing for 24 h. Samples were centrifuged at 20,000 × g for 10 min to pellet insoluble drug. The supernatants containing solubilized drug were vacuum-dried then re-dispersed in methanol for drug concentration measurement using a Waters ACQUITY ultra performance liquid chromatography (UPLC) H-Class System with TUV detector and Empower 3 software (Milford, MA, USA). CAB and MCAB samples were separated on a Phenomenex Kinetex 5 µm C18 column (150 × 4.6 mm) (Torrance, CA) using either 65% 5.0 mM KH2PO4, pH 3.2/35% ACN or 90% ACN/10% water with a flow rate of 1.0 mL/min and detected at 254 and 230 nm, respectively. Drug content was quantitated by comparison of peak area to those of known standards (0.05–50 µg/mL in methanol).
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7

UHPLC Analysis of Compound Separation

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The samples were analyzed by ultra-high-performance liquid chromatography (UHPLC), using a Waters Acquity Ultra-performance liquid chromatography (UPLC) H-Class system (Milford, MA, USA), equipped with a vacuum degasser, a quaternary pump, an autosampler and a column heater. Chromatographic separation was carried out at 45 °C on a Waters Cortecs UPLC C18 column (4.6 × 50 mm, 2.7 μm). A mobile phase with two eluent solvents were used: eluent (A) acetonitrile and eluent (B) 5% methanol and 0.1% formic acid in Mili-Q water. The gradient elution was as follows: 0–2% A at 0–2 min, 2–7% A at 2–5 min, 7–13% A at 5–7 min, 13–20% A at 7–9 min, 20–55% A at 9–11.5 min, 55–90% A at 11.5–13.5 min, 90% A at 13.5–14.5 min, 90–3% A at 14.5–14.95 min, 3% A at 14.95–18 min, and 3–0% A at 18–20 min. The flow rate was kept at 0.25 mL/min, and the injection volume was 10 μL. The eluate was monitored at 520 nm on the PDA.
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8

Vitamin E Quantification in Dehulled Seeds

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Vitamin E in de-hulled (palea and lemma removed) seeds was analysed following Ko et al. (2003) . Briefly, the ground sample (50 g) was mixed with 300 ml n-hexane for 2 h, then concentrated by evaporating hexane using nitrogen gas. The lipid extract (0.5 g) was mixed with 2 ml 5% pyrogallol solution in ethanol and 20 ml ethanol. After boiling at 70°C, 1 ml of 50% aqueous KOH was added for the 5 min saponification. The sample was extracted by 50 ml diethyl ether, washed with 20 ml distilled water, filtered through anhydrous sodium sulphate and evaporated at 30°C. The residue was diluted with 10 ml n-hexane and filtered through a Millipore 0.2 μm membrane. Individual vitamin E homologues were quantified by ultra-performance liquid chromatography (UPLC, H-Class System, Waters, Massachusetts, USA) at 298 nm excitation and 325 nm emission with a Lichrospher Si-60 column (250 × 4.6 mm i.d.; Merck Co., Gernsheim, Germany) . Descriptive statistics of all traits and correlations were analysed using STAR v2.0.1 (International Rice Research Institute).
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9

UPLC and Fluorescence Spectroscopy Protocol

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Equipment. The ultra performance liquid chromatography (UPLC) H-class system (Singapore) was equipped with Empower 3 software (Waters Corporation, Milford, MA, USA), and an H-class Waters column (ACQUITY UPLC BEH C18; 2.1x100 mm; 1.7 µm; Waters Corporation) for UPLC separation. The RF-5301PC fluorescence spectrophotometer was purchased from Shimadzu Scientific Instruments (Columbia, MD, USA). The Bio-Tech Synergy 22100 microplate reader (cat. no. 168-1002XC) was obtained from Bio-Rad Laboratories, Inc. (Hercules, CA, USA), and the CF16RX-Ⅱ centrifuge was purchased from Hitachi Koki Co., Ltd (Tokyo, Japan). A Nikon ECLIPSE Ti-U biological microscope (Nikon Corporation, Tokyo, Japan) was used to count the number of cells. Transwell culture plates were purchased from Corning Costar (Corning Incorporated, Corning, NY, USA) and the Pre-Coated PAMPA Plate system was obtained from BD Biosciences (Bedford, MA, USA).
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