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3 protocols using polytron homogenizer

1

Western Blot Analysis of Histone Modifications

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Tissue samples of 1mg were disrupted with a Brinkman Polytron Homogenizer (Model PT10–35) in 1ml CelLytic MT Cell Lysis Buffer (Sigma-Aldrich) containing Protease Inhibitor Cocktail and Phosphatase Inhibitor Cocktail (Roche). 30 micrograms of tissue extract or whole cell lysates from 50,000 culture cells were separated on 4–20% gradient SDS-PAGE and transferred to PVDF membrane. Antibodies against phospho-Histone H3-ser10 (D47G5) were obtained from Cell Signaling Technology. BRG1 antibody (H-88; sc107687) was obtained from Santa Cruz Biotechnology. Loading was monitored by Western detection of Histone H4 (EMD Millipore), Lamin B (Santa Cruz; sc377001), GAPDH (Sigma: G9295), or by Coomassie Brilliant Blue staining.
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2

Quantifying Soluble Collagen and IgE

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Tissue samples were immediately frozen in liquid nitrogen, disrupted using a Polytron homogenizer (pellet pestles cordless motor, Sigma), and centrifuged at 3000 rpm for 20 min. Proteins were purified from the supernatant, and the concentration was assessed using the Bradford method (Bio-Rad, Hercules, CA). Total soluble collagen was quantified using the Sircol Soluble Collagen Assay (Bio-color, Belfast, Ireland) as previously described [19 ]. Concentrations of IgE were determined with a Mouse IgE ELISA MAX Standard kit (Biolegend, 432401).
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3

Western Blot Analysis of HDAC2 Expression

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We disrupted separated lung tissues that had been immediately frozen in liquid nitrogen using a Polytron homogenizer (Pellet pestles cordless motor; Sigma) and centrifuged them. We purified the proteins from the supernatant and assessed the concentrations using the Bradford method. We separated the protein samples by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred them to a polyvinylidene difluoride membrane (Amersham Pharmacia Biotech, Little Chalfont, UK). After blocking with 5% skimmed milk (Difco, BD, San Jose, CA, USA), we incubated the membrane overnight with an anti-HDAC2 antibody (1:1,000, rabbit monoclonal; Abcam, Cambridge, UK). We washed the membrane three times with TBST and incubated it with a secondary antibody for 2 hours. Horseradish peroxidase-conjugated goat anti rabbit IgG (1:2,000, Santa Cruz Biotech, Dallas, TX, USA) was used as the secondary antibody. We detected the target proteins using the ECL Western Blotting Analysis System (Thermo Fisher Scientific, Rockford, IL, USA). We either exposed the membrane to X-ray film or analyzed it with an LAS 3000 (Fujifilm, Tokyo, Japan) image analyzer using Multi Gauge v. 3.0 software. We also quantified the HDAC2 and ß-actin band intensities with Multi Gauge.
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