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Rt reagent kit gdna eraser

Manufactured by Takara Bio
Sourced in United States, Japan

The RT reagent Kit gDNA Eraser is a laboratory product designed for the removal of genomic DNA (gDNA) from RNA samples prior to reverse transcription (RT) reactions. The kit includes the necessary components to effectively eliminate gDNA contamination, ensuring the accuracy of subsequent RNA analysis.

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13 protocols using rt reagent kit gdna eraser

1

Quantitative Analysis of MMP28 Expression

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Total RNA of PANC-1 and SW1990 cells were isolated using TRIzol reagent (Invitrogen, USA). cDNA samples were prepared using the RT reagent Kit gDNA Eraser (TaKaRa). cDNA expression levels were detected by SYBR-Green (TaKaRa) with qRT-PCR analysis. GAPDH was used as an internal reference gene. Primers with the following sequences were used: MMP28, Forward (F):5ʹ-TCCCACCTCCACTCGATTCAG-3ʹ, Reverse (R):5ʹ-GCCGCATAACTGTTGGTATCT-3ʹ; glyceraldehyde 3-phosphate dehydrogenase (GAPDH), Forward (F): 5ʹ-ACAACTTTGGTATCGTGGAAGG-3ʹ, Reverse (R):5ʹ- GCCATCACGCCACAGTTTC-3ʹ.
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2

RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA, USA) according to manufacturer's instructions. The mRNAs were reverse transcribed to cDNA using RT reagent Kit gDNA Eraser (Takara, Japan). cDNAs were then used for qRT-PCR analysis using SYBR Green (TaKaRa). Primer sequences are listed in Supplementary Table 2.
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3

RNA Extraction and Detection via qPCR

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Total RNA extracted from transfected cells was reverse-transcribed with RT reagent Kit gDNA Eraser (TaKaRa) and detected by SYBR-Green (TaKaRa). The PCR primers are listed in Table S5.
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4

Analyzing USP1 Expression in Ovarian Cells

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Trizol Reagent (Invitrogen, Carlsbad, CA, United States) was used to extract total RNA from OV cell lines, which was then reverse transcribed using the RT Reagent Kit gDNA Eraser (TaKaRa). Then the expression of cDNA was detected by SYBR-Green (TaKaRa) and qRT-PCR, with β-ACTIN acting as an internal reference. Primers are depicted below:
hUSP1 Forward (F): 5′-GCC​AAT​GAG​AGC​GGA​AGG​AG-3′;
hUSP1 Reverse(R): 5′-CAA​TTA​GAT​GGG​CGG​GAG​CA-3′.
hβ-ACTIN Forward (F): 5′-AGT​TGC​GTT​ACA​CCC​TTT​CTT​G-3′;
hβ-ACTIN Reverse(R): 5′-CAC​CTT​CAC​CGT​TCC​AGT​TTT-3′.
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5

Comprehensive RNA Extraction and qPCR Analysis

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Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA, USA). The concentration and quality of RNA were determined using a NanoDrop one spectrophotometer (Thermo Fisher Scientific). An amount of 1 μg of RNA was used to synthesize cDNA using the RT reagent Kit gDNA Eraser (RR047A, Takara, Shiga, Japan). The corresponding cDNAs were subjected to quantitative PCR analysis using TB Green (RR820A, Takara). The used primers for qRT-PCR assays are listed in Supplementary Table S2.
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6

Gene and miRNA Expression Analysis

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Total RNA was extracted from 293T cells with Trizol Reagent (Invitrogen) according to the manufacturer’s instructions, and was reversely transcribed with RT reagent Kit gDNA Eraser (Takara, Kusatsu-shi, Japan). TB Green® Premix Ex TaqTM II (Takara) was applied to detect cDNA expression levels with β-ACTIN as the internal reference. In addition, total miRNA was isolated using the EasyPure® miRNA Kit (TransGen, Beijing, China) following the manufacturer’s protocol. The miRNA expression analysis was performed using TransScript® Green miRNA Two-Step qRT-PCR SuperMix (TransGen) with U6 as the internal reference. Real-time PCR was performed on the LightCycler System 2.0 (Roche, Mannheim, Germany) at a temperature of 95 °C for 30 s, followed by 40 cycles with a temperature of 95 °C for 5 s, and 60 °C for 30 s. The primers are shown in Supplementary Table S1. All experiments were repeated three times and the relative gene expression was calculated by the 2-ΔΔCt method.
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7

Quantitative Gene Expression Analysis

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Total RNA extracted from transfected cells was reverse transcribed with RT reagent Kit gDNA Eraser (TaKaRa) and detected by SYBR-Green (TaKaRa). The PCR primers were listed in Supplementary Table S2.
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8

Quantifying AUNIP Expression in Oral Squamous Cell Carcinoma

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Total RNA extracted from SCC-15 and SCC-9 with Trizol Reagent (Invitrogen, Carlsbad, CA, USA) were reverse transcribed with RT reagent Kit gDNA Eraser (TaKaRa). Next, SYBR-Green (TaKaRa) and qRT-PCR analysis were used for detecting cDNA expression levels and β-ACTIN was used as internal reference. Primers were shown as follows: hβ-ACTIN, Forward (F): 5′-AGTTGCGTTACACCCTTTCTTG-3′, Reverse (R): 5′-CACCTTCACCGTTCCAGTTTT-3′; hAUNIP, Forward (F): 5′- GCGGAAAGTGCAGACACATTT -3′, Reverse (R): 5′- TCTCTGGTGAATGCCTGTAGAT -3′.
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9

Quantifying mRNA Expression in Breast Cancer Cells

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Total RNA extracted from MCF-7 and MDA-MB-231 cells with Trizol Reagent (Invitrogen, Carlsbad, CA, USA) were reverse transcribed with RT reagent Kit gDNA Eraser (TaKaRa). Next, SYBR-Green (TaKaRa) and qRT-PCR analysis were used for detecting cDNA expression levels and β-ACTIN was used as internal reference. Primers were shown as follows: β-ACTIN, Forward (F): 5′-TGGCACCCAGCACAATGAA-3′, Reverse(R): 5′-CTAAGTCATAGTCCGCCTAGAAGCA-3′; hFBXO1, Forward (F): 5′-ATGGCTCACGGACAACACTT-3′, Reverse (R): 5′-TGGGGACTCGAATCTTCCCT-3′.
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10

LUSC Cell RNA Quantification

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Total RNA was extracted from LUSC-related cells with Trizol Reagent (Invitrogen, Carlsbad, CA, USA), which was reversely transcribed with RT reagent Kit gDNA Eraser (TaKaRa). And then, cDNA expression levels were detected by SYBR-Green (TaKaRa) and qRT-PCR analysis with GAPDH as internal reference. The primers were: GAPDH, Forward (F): 5'-TGTGTCCGTCGTGGATCTGA-3', Reverse(R): 5'-CCTGCTTCACCACCTTCTTGA-3'; hCHMP4C, Forward (F): 5'-AGACTGAGGAGATGCTGGGCAA-3', Reverse (R): 5'-TAGTGCCTGTAATGCAGCTCGC-3'. PCR amplification was carried out in a formula of three Wells. All experiments were repeated three times and genes’ relative expression levels were studied with 2−ΔΔCt.
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