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3 protocols using goat anti mouse conjugated with horseradish peroxidase

1

Quantifying HIF-1α Protein Activity

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To compare the activity of HIF-1α WT proteins between mutants A and B and the control under normoxic conditions (20% O2), the following five groups were transfected into NP cells using Lipofectamine (Invitrogen, Waltham, MA, USA): (1) Desferrioxamine (DFO) only, (2) pcDNA3 only, (3) pHIF-1α WT, (4) pHIF-1α Mut A, and (5) pHIF-1α Mut B. DFO was used as a positive control, because it inhibits both PHD enzyme and FIH-1 enzyme activities [41 (link)]. The transfected cells were lysed using a cell fractionation kit (Cell Signaling Technology, Danvers, MA, USA). The cells were separated into nuclear and cytoplasmic fractions in Nupage 4–12% Bis-Tris gels (Invitrogen, Waltham, MA, USA) and then transferred to polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% skim milk and washed with phosphate-buffered saline and 0.2% Tween 20 buffer. The membranes were blotted with mouse anti-HIF-1α (Cell Signaling Technology, Danvers, MA, USA), mouse anti-nuclear lamin A/C, or anti-α-tubulin (Santa Cruz Biotechnology, Dallas, TX, USA) antibodies. The blots were treated with goat anti-mouse conjugated with horseradish peroxidase (Santa Cruz Biotechnology, Dallas, TX, USA) and visualized using an enhanced chemiluminescence system (Uppsala, Sweden).
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2

Quantifying Protein Levels via Western Blot

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Western blot analysis was carried out as described previously.22 (link) Briefly, membrane was blocked with 5% bovine serum albumin (BSA) for 60 minutes at room temperature, then incubated with mouse anti-UTX (CST Danvers, MA, USA, 1 : 1000), mouse anti-PDGFRα (Santa Cruz, 1:1000), rabbit anti-TCF21 (Aviva Systems Biology, 1 : 1000), αSMA (Abcam, 1:2000), glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Proteintech, 1:2000), and histone H3 (CST, 1 : 2000). Goat anti-rabbit or goat anti-mouse conjugated with horseradish peroxidase (Santa Cruz, 1:2000) was used as the secondary antibodies and incubated for 1 hour at room temperature. After washing with 1× TBST between antibody incubations, protein bands were developed in enhanced chemiluminescence and the density was quantified using Image J software.
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3

Western Blot Analysis of HBZ Protein

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Transfected cells were lysed in 1x Passive Lysis Buffer (Promega, Madison, WI) with protease inhibitor cocktail (Roche, Mannheim, Germany). Protein concentrations were measured using a Nanodrop spectrophotometer (Thermo Fisher Scientific, Waltham, MA). SDS dye (6x solution) was added to the lysates and samples were boiled for 10 min. Twenty micrograms of protein were resolved by SDS-PAGE and transferred to nitrocellulose membranes. Blots were probed with a rabbit polyclonal anti-HBZ antiserum (1∶1000), a mouse anti-Flag M2 antibody (1∶5000) (Sigma Aldrich, St. Louis, MO), or mouse anti-Actin (1∶10000) according to standard procedures. Secondary antibodies used included goat anti-rabbit and goat anti-mouse conjugated with horseradish peroxidase (Santa Cruz Biotechnology, Santa Cruz, CA) at a dilution of 1∶2000. Blots were developed using Immunocruz luminol reagent (Santa Cruz Biotechnology) and imaged using the Fuji LAS 4000 imaging system (GE Healthcare Life Sciences, Piscataway, NJ). Densitometry was measured using Multi Gauge version 3.0 software (Fujifilm, Tokyo, Japan).
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