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8 protocols using α farnesene

1

Profiling Aroma Compounds in Carob Pods

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Ceratonia siliqua trees were grown in the semi-arid “Siwa” Oasis, Egypt and pods were collected in the full ripe stage during the month of May 2016. A voucher specimen code “6-4-2017” was kept in the Department of Pharmacognosy, Faculty of Pharmacy, Cairo University, Egypt. Roasting was accomplished by heating pods in an oven set at 120 °C for 30 min. Three to 4 biological replicates were analyzed for each sample. The fruits were stored at −20 °C till further analysis. SPME holder and fiber coated with 50 μm/30 μm Divinyl benzene/Carboxen/Polydimethylsiloxane (DVB–CAR–PDMS) was supplied by Supelco (Oakville, ON, Canada). All volatile standards i.e., (E)-cinnamaldehyde, α-farnesene, hexanoic and benzoic acids used in the analyses were purchased from Sigma Aldrich (St. Louis, Mo., U.S.A.).
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2

Quantitative Analysis of Volatile Compounds

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The following reference standards were purchased from Sigma-Aldrich (St. Louis, MO, USA): C7-C30 saturated alkane mixed standard, (internal standard) 2-methyl-3-heptanone, 2-methylpropyl 2-methylpropanoate, β-myrcene, β-trans-ocimene, ethyl hexanoate, 3-octanone, hexyl acetate, 2-methylbutyl 2-methylbutanoate, (Z)-3-hexenyl acetate, (Z)-hex-3-en-1-ol, 2-nonanone, 3-octanol, ethyl octanoate, (Z)-3-hexenyl butanoate, α-gurgujene, linalool, β-caryophyllene, (Z)-3-hexenyl (E)-2-butenoate, 2-undecanone, methyl benzoate, (Z)-3-hexenyl hexanoate, ethyl benzoate, humulene, α-farnesene, (Z)-3-hexenyl benzoate, and β-ocimene. All chemicals were of analytical grade or higher.
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3

Comprehensive Volatile Compound Analysis

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n-Alkanes (C8–C40) were purchased from J&K Scientific, Beijing, China. Benzaldehyde, benzyl alcohol, (Z)-3-hexenyl acetate, methyl salicylate, and 2-phenylethanol were purchased from Wako Pure Chemical Industries Ltd, Osaka, Japan. Ethyl n-decanoate, geraniol, 1-hexanol, (Z)-3-hexenol, phenylacetaldehyde, α-farnesene, (E)-nerolidol, linalool, linalool oxide, polyvinylpolypyrrolidone (PVPP), and XAD-2 were purchased from Sigma-Aldrich Company Ltd., Louis, MO, USA. geraniol was purchased from TCI Development Co., Ltd, Shanghai, China. The Quick RNA isolation kit was purchased from Huayueyang Biotechnology Co., Ltd., Beijing, China. The 2× SYBR Green Universal PCR Mastermix was purchased from Bio-Rad Laboratories, Richmond, CA, USA.
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4

Detailed Volatile Organic Compound Analysis

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All VOC standards were purchased from Sigma-Aldrich (St. Louis, MO, United States): 1-penten-3-ol, 1-penten-3-one, 3-pentanone, α-caryophyllene, α-farnesene, α-pinene, β-caryophyllene, β-farnesene, β-ionone, benzaldehyde, cis-3-hexen-1-ol, cis-3-hexenyl acetate, eugenol, hexyl acetate, jasmone, limonene, linalool, methyl jasmonate, methyl salicylate, ocimene, trans-2-hexen-1-al. All VOC standards were diluted in 100% methanol.
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5

Analysis of Volatile Compounds in Tea

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Five-year-old tea plants of Camellia sinensis cv. “Shu Cha Zao” grown at the experimental farm of Anhui Agricultural University in Hefei, China, were used in this study. Standards of geranyl diphosphate (GDP), farnesyl diphosphate (FDP), β-myrcene, β-ocimene, linalool, geraniol, α-citral, β-citral, methyl geranate, nerol, D-limonene, trans-linalool oxide (furanoid), neryl acetate, L-terpineol, α-terpinen, geranyl acetone, thymol, (Z)-nerolidol, α-farnesene, β-farnesene, (E)-nerolidol, humulene, α-ionone, β-ionone, (E)-γ-bisabolene, cadinol and caryophyllene were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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6

Synthetic standards for analytical chemistry

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The following synthetic standards were purchased from Sigma-Aldrich and tested in the concentration 5×10-3 µg µL-1: methyl (E)-hex-3-enoate, methyl (E)-hex-2-enoate, 6-methylhept-5-en-2-one, ethyl hexanoate, ethyl (E)-hex-3-enoate, methyl (E)-oct-2-enoate, geranyl acetone, (E,E)-α-farnesene, methyl (2E,6E)-farnesoate, linalool, (E)-non-2-enal, (Z)-non-3-enol, and (Z)-non-2-enol. (Z)-Non-3-enal and (Z)-non-2-enal were prepared in our laboratory from the corresponding alcohols (Hazzard 1973 ). The purchased and synthesised chemicals were of analytical grade purity.
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7

Quantification of α-farnesene by GC-FID

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The fermentation broth was centrifuged at 12,000 rpm for 10 min. Then, the upper layer of n-dodecane liquid was filtered. A total of 100 μL of samples in n-dodecane phase were taken out and diluted ten times, and then a small amount of anhydrous copper sulfate was added to remove residual water. Quantification was performed using Shimadzu GC-2010 plus, a gas chromatograph equipped with a flame ionization detector (FID). The detection method of α-farnesene is as described by Liu et al. [3 (link)]. The standard α-farnesene, antibiotics and chemicals were purchased from Sigma (Sigma-Aldrich, Burlington, MA, USA).
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8

Mandarin Cultivars Spray Drying Evaluation

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Two cultivars of mandarin, Afourer (A) and Richard Special (RS), were kindly donated by the First Fresh (NZ) Ltd. (Gisborne, New Zealand). Two carrier materials for spray drying, maltodextrin (MD: 10–13 DE) and gum arabic (GA), were purchased from Ingredion Ltd. (Singapore) and Hawkins Watts Ltd. (Auckland, New Zealand), respectively. The chemicals were sources, as below: 2,4,6-Tripyridyl-s-Triazine (TPTZ), gallic acid, and 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), were purchased from Sigma–Aldrich (Auckland, New Zealand); 2,2-azino-bis-3-ethylbenzothiazaoline-6-sulfonic acid (ABTS) was purchased from Abcam Inc. (Melbourne, VIC, Australia); formic acid was obtained from EMD Millipore Corporation (Billerica, MA, USA).
Authentic standards, including chlorogenic acid (≥95%), ferulic acid (≥99%), p-coumaric acid (≥98%), vanillic acid (≥97%), α-pinene (≥98%), β-myrcene (≥90%), d-limonene (≥97%), γ-terpinene (≥95%), α-terpineol (≥95%), β-famesene (≥99%), linalool (≥97%), α-farnesene (≥99%), nerol (≥97%), hexanal (≥98%), and 3-octanol (≥98.5%), were purchased from Sigma–Aldrich (Auckland, New Zealand). Hesperidin (HPLC grade) and p-hydroxybenzoic acid (HPLC grade, ≥99%) were purchased from Abcam Inc. (Melbourne, VIC, Australia).
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