The largest database of trusted experimental protocols

8 protocols using bis acrylamide

1

Fabrication of Polyacrylamide Cell Substrates

Check if the same lab product or an alternative is used in the 5 most similar protocols
Polyacrylamide substrates were synthesized for cell analysis as previously described[17 ]. Two different rigidity substrates were fabricated: soft with 8% acrylamide (Sigma Aldrich) and 0.02% bis-acrylamide (~2 kPa, GE Healthcare Life Sciences) and hard (8% acrylamide and 0.06% bis-acrylamide, ~8 kPa). Briefly, glass coverslips were activated by incubation in 1% 3-aminopropyltriethoxysilane followed by 0.5% glutaraldehyde. acrylamide solutions were made with 200 nm red particles (Invitrogen) and ammonium persulfate and tetramethylethylenediamine were added to initiate gel polymerization. This solution was then added to glass slides and an activated coverslip added on top. In order to allow for cell adherence, the surface was activated with 0.2 mg/mL sulfosuccinimidyl-6-(4′-azido-2′-nitrophenylamino)-hexanoate (G-Biosciences) and coated with 0.2 mg/mL rat tail collagen I (Corning), which has previously been shown to play a critical role in MSC differentiation [18 (link)], overnight at 4°C with agitation. Substrates were sterilized under UV light and incubated in media for at least an hour before use. Mechanical properties of the substrates were assessed via compression testing using a Bose Endura TEC ELF 3200 Uniaxial Testing System (data not shown). The Young’s modulus was calculated from the slope of the linear region of the stress vs. strain curve at less than 10% strain.
+ Open protocol
+ Expand
2

Proteomics Sample Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Acrylamide, bisAcrylamide, Dithiothreitol (DTT), iodoacetamide, 3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS), Sodium Dodecyl Sulfate (SDS), urea, glycerol, thiourea, Tetramethylethylenediamine (TEMED), Ammonium Persulfate (APS), molecular markers and Immobilized pH Gradient (IPG) buffer were obtained from GE Healthcare Life Sciences (São Paulo, SP, Brazil). Triton X-100, Bovine Serum Albumin (BSA) and Coomassie Brilliant Blue (CBB) were obtained from Sigma-Aldrich (São Paulo, SP, Brazil). Trypsin was obtained from Promega (São Paulo, SP, Brazil).
+ Open protocol
+ Expand
3

Protein Separation and Identification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sephacryl S-200 HR and sodium hydrosulfite were obtained from Sigma-Aldrich chemicals Co., Sweden. The disposable PD-10 columns, IPG strips, DTT, Iodoacetamide, Acrylamide, Bis-Acrylamide, Glycine, Methanol, Glacial Acetic acid, β-mercaptoenthanol and Coomassie blue, were obtained from GE Health Care. HNE was obtained from Cayman Chemical Company. Dialysis tubing was sourced from Spectrum laboratories, Inc. (Rancho Domingues, CA, USA). OFFGEL starter kit was procured from Agilent Technologies. All chemicals were of reagent grade or greater purity.
+ Open protocol
+ Expand
4

Recombinant Histone Purification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Acrylamide, Bis-Acrylamide, SDS, tetramethylethylenediamine (TEMED), dithiothreitol and ammonium persulfate were purchased from GE Healthcare (Pittsburgh, PA, USA). BAC was purchased from Polysciences, Inc. (Warrington, PA, USA). Sequencing-grade trypsin was purchased from Promega (Madison, WI, USA). Recombinant human histone samples were purchased from New England Biolabs (Ipswich, MA, USA). Other chemicals unless specified were analytical grade and purchased from Wako (Osaka, Japan).
+ Open protocol
+ Expand
5

Biochemical Assays and Molecular Analyses

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isoproterenol hydrochloride and protease inhibitor cocktail were purchased from Sigma Chemical Co., St. Louis, MO, USA; while the chemicals used for biochemical assays were products of E. Merck Ltd., Mumbai, India. All other chemicals and reagents used were procured from Hi-Media, Mumbai, India. Thio-barbituric acid (TBA), sodium dodecyl sulphate (SDS), Ellman’s reagent and m-phosphoric acid were obtained from E. Merck Ltd., Mumbai, India. While assay kits for CK-MB, LDH, AST and ALT were purchased from Teco Diagnostic,USA; for total cholesterol, Triglyceride and HDL-C, kits were obtained from Span diagnostics Pvt. Ltd., Surat, India. The TNF-α and IL-6 specific ELISA kits were from Ray Biotech, Inc., USA and cardiac troponin-I (cTnI) kit was procured from the Ortho-Clinical Diagnostics, Inc. New York, USA. While Bisacrylamide, Tris hydroxymethyl aminomethane (Tris), glycine, N,N, NU,NU-tetramethylethyldiamide, ammonium persulfate, glycerol, ultra pure urea, 2D cleanup kit and 2D Quant kit were purchased from GE Healthcare, Amersham, Freiburg, Germany; Acrylamide, dithiothreitol, 3–3–1-propane-sulfonate, agarose and Iodoacetamide were purchased from Fluka BioChemika, Buchs, Switzerland.
+ Open protocol
+ Expand
6

Protein Extraction and Separation

Check if the same lab product or an alternative is used in the 5 most similar protocols

Acrylamide, bisAcrylamide, DTT, iodoacetamide, CHAPS, SDS, urea, glycerol, thiourea,
TEMED, ammonium persulfate (APS), molecular markers and IPG buffer were obtained from GE
Healthcare Life Sciences (São Paulo, SP, Brazil). Triton X-100, BSA and CBB were obtained
from SIGMA-ALDRICH (São Paulo, SP, Brazil). Trypsin was obtained from Promega (São
Paulo, SP, Brazil).
+ Open protocol
+ Expand
7

Antibody-based Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
EMEM (Eagle's minimum essential medium) was purchased from Sigma (St. Louis, MO). Foetal bovine serum (FBS) was obtained from Gibco. Antibodies; pan-Ras, c-Raf, RSK, phosopho-Elk1, c-Jun, phospho-JNK-1/2, c-myc, HIF-1α, Bcl-2, Bax, NFκB p50 and p52, VEGF, phospho-GSK3β, phospho-p38 MAPK and p53 were obtained from MERCK, San Diego, USA. While urea, CHAPS, DTT IPG buffer (pH 3-11NL), SDS, bromophenol blue Tris, glycine, acrylamide, bis-acrylamide were purchased from GE Healthcare.
+ Open protocol
+ Expand
8

Proteomic Analysis of Bacterial Toxins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Acrylamide (17-1302-02), bis-Acrylamide (17-1304-02), sodium dodecyl sulphate (SDS) (17-1313-01), HiTrap Protein-A Sepharose high-performance column (17-0402-01), and Superdex 75 Increase 10/300 GL (29148721) were acquired from GE Healthcare Life Sciences (São Paulo, SP, Brazil) . Azocasein (A2765), bromelain (code B4882), Lcysteine (C7352), O-phthaldialdehyde (P0657), β-mercaptoethanol (M6250), Evans blue dye (E2129), cholera toxin from Vibrio cholerae (C8052), Freund's complete (F5881) and incomplete (F5506) adjuvant, alkaline phosphatase-conjugated goat anti-rabbit IgG antibodies (A6066) and p-nitrophenylphosphate disodium (N2765) were obtained from Sigma-Aldrich (São Paulo, SP, Brazil). All other chemicals were of analytical grade.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!