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5 protocols using facsaira

1

Annexin V-FITC Apoptosis Assay

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The apoptosis assay was performed using an ANXA5/annexin V-FITC-propidium iodide (PI) apoptosis detection kit (Beyotime Biotechnology, C1062L). In brief, RPE cells were washed three times with ice-cold PBS. The cells were resuspended with 300 μL 1× binding buffer and incubated with 5 μL ANXA5-FITC for 10 min at room temperature. Subsequently, the cells were incubated with 5 μL PI at room temperature for 5 min in the dark. After incubation, apoptotic cells were detected by flow cytometry (FACSAira, Becton Dickinson, Franklin Lakes, NJ, USA) using 200 μL 1× binding buffer per tube.
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2

Apoptosis Evaluation of Amyloid-Beta Oligomers

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This assay was carried out following the manufacturer's instructions from the Annexin-V FITC/PI apoptosis detection kit (Vazyme Biotech Co., Ltd., Nanjing, China). Briefly, ARPE-19 cells (1 3 10 5 cells/well) were seeded into 24-well plates and incubated at 378C and 5% CO 2 until confluent. The medium was then discarded, and replaced with serum-free medium to starve the cells for 24 hours. The oligomeric form of Ab1-42 (0.1, 1.0, and 10.0 lM) was added to the wells for 24, 48, and 72 hours. The cells were harvested by digestion with trypsin, followed by washing three times with ice-cold PBS. The cell pellets were resuspended with 100 lL 1X binding buffer and incubated with 5 lL Annexin-V FITC and 5 lL PI at room temperature for 10 minutes in the dark. Afterward, flow cytometry (FCM; FACSAira, Becton Dickinson, Franklin Lakes, NJ, USA) was used to measure the cells with 400 lL 1X binding buffer per tube.
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Isolation and Characterization of CSCs

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ALDEFLUORTM assays (STEMCELL Technologies) were performed to isolate and characterize CSC populations from A549 NSCLC cell cultures per the manufacturer’s instructions. Briefly, 106 cells were harvested from cell cultures and resuspended in an ALDEFLUOR assay buffer containing an aldehyde dehydrogenase (ALDH) substrate. As a negative control, an aliquot of ALDEFLUOR-exposed cells was immediately quenched with the specific ALDH inhibitor, N,N-diethylaminobenzaldehyde. After incubating for 30 min at 37 °C, cells were washed and sorted as ALDH1high or ALDH1low cells using a FACSAira flow cytometer (BD Biosciences).
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Evaluating DAC's Impact on DC Phenotype and Function

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To detect the effect of DAC on the DC surface markers, DAC-treated and -untreated DCs were stained by anti-human CD86-APC, CD80-PE, HLA-DR-PE/Cy5, CD83-PE and CD40-PerCP-Cy5.5 (all antibodies were from BioLegend, San Diego, USA) at 4°C for 30 minutes. The expression of cell surface markers was detected by flow cytometry (FACSAira, BD Biosciences, Franklin Lakes, USA) and analyzed as the median fluorescence intensity (MFI). The histograms with overlays were made by FlowJo software (Treestar, Inc., San Carlos, USA).
To investigate whether DAC affects the function of DCs in relation to its effect on differentiating T cells into Th1/Th17 subsets, CD4+ cells were co-cultured with DAC-treated or -untreated DCs for 5 days as previously described [11 (link)]. Then 100 ng/ml PMA (Sigma-Aldrich, St. Louis, USA) and 1 μg/ml ionomycin (Sigma-Aldrich, St. Louis, USA) were added to the cells at 37°C for 1 hour and subsequently incubated for an additional 4 hours with 10 μg/ml brefeldin A (Sigma-Aldrich, St. Louis, USA). Anti- IFN-γ-FITC and IL-17A-PE antibodies (both from eBioscience, San Diego, USA) were used to perform the intracellular staining for 30 minutes at 4°C. The frequencies of CD4+ IFN-γ+ and CD4+ IL-17A+ cells were detected with the FACSAira flow cytometer (BD Biosciences, Franklin Lakes, USA).
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5

Phenotypic and Functional Characterization of DCs

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DAC-treated and –untreated DCs were incubated with anti-human HLA-DR- phycoerythrin-cyanin 5, CD86-allophycocyanin, CD80-phycoerythrin, CD40-peridinin chlorophyll-cyanin 5.5 and CD83-phycoerythrin at 4 °C for 30 minutes. All these antibodies were bought from BioLegend (CA, USA). Flow cytometry (FACSAira, BD Biosciences, USA) tests were performed to measure the changes of the markers. The results were shown as median fluorescence intensity (MFI) and were analyzed by FlowJo software (Treestar, Inc., CA, USA). For the co-culture experiment, CD4+ cells co-cultured with DAC-treated or –untreated DCs were incubated with 100 ng/ml phorbol 12-myristate 13-acetate (PMA) and 1 μg/ml ionomycin for 1 hour at 37 °C and then added 10 μg/ml brefeldin A (all from Sigma-Aldrich, MO, USA) for an additional 4 hours. The frequency of CD4+ IFN-γ+ and CD4+ IL-17A+ cells were detected by flow cytometry. Briefly, CD4+ cells were permeabilized by using the Intracellular Fixation & Permeabilization Set (eBioscience, CA, USA). The cells were subsequently stained with anti-human IL-17A-PE (eBioscience, CA, USA) and anti-human IFN-γ-FITC (eBioscience, CA, USA) for 30 minutes at 4 °C.
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