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6 protocols using human sera

1

Serum Inactivation of Bacterial Cells

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Bacterial cells (∼3.5 × 105 CFU) from a mid-log culture were treated with 100 μg/ml of purified RAD2-DpK2. Human sera (Sigma-Aldrich catalog no. S7023) were prewarmed to either 37°C (active) or 50°C (heat inactivated) for 30 min and then added to enzyme-treated cells (80% final concentration) and incubated at 37°C for 3 h. Viable bacterial counts were determined before and after incubation with serum.
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2

Determination of Thiol Compounds

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Commercially available materials were used
without further purification. DTNB, DMSO, l-cysteine (Cys), dl-homocysteine (Hcy), glycine (Gly), l-alanine (Ala), dl-arginine (Arg), l-proline (Pro), ascorbic acid,
and human sera were purchased from Sigma-Aldrich. NADH was purchased
from Roche. l-Glutathione reduced (GSH) and l-glutathione
oxidized (GSSG) were obtained from Acros Organics. Silica strips were
prepared manually from silica gel 60 with 0.20 mm of thickness placed
on aluminum sheets (20 cm × 20 cm) for thin-layer chromatography.
These silica sheets were purchased from Macherey-Nagel. Deionized
water, chloroform, and ethanol were supplied by Scharlab.
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3

Buffers, Reagents, and Biological Samples

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10 mM Tris hydrochloride buffer (pH = 8.0) and 0.01 M phosphate buffered saline (pH = 7.4) were purchased from Bioworld Inc. and Sigma-Aldrich, respectively. 0.1 M 2-(N-morpholino) ethanesulfonic acid (MES, pH = 4.7) buffer was purchased from Thermo Fisher Scientific and diluted to 25 mM using deionized water. Washing buffer was prepared by diluting Tween-20 (Sigma-Aldrich) in PBS to produce a 0.05% (w/v) Tween-20 solution. N-(3-dimethylaminopropyl)-N-ethylcarbodiimide (EDC) was purchased from Thermo Fisher Scientific. N-hydroxysuccinimide (NHS) and horseradish peroxidase (HRP) were purchased from Sigma-Aldrich. Enhanced K-Blue TMB substrate was purchased from Neogen Inc. Matrix Guard Diluent, StabilBlock Immunoassay Stabilizer, StabilCoat Plus Immunoassay Stabilizer and Staiblzyme HRP Conjugate Stabilizer were purchased from Surmodics Inc. Human sera was purchased from Sigma-Aldrich and human plasma and whole blood were purchased from BioIVT. Blood samples from donors with P. falciparum infection obtained in Uganda under IRB/EC approval for general research use were purchased from Discovery Life Sciences. All human samples were de-identified of identifying information.
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4

ELISA for Detection of Anti-sEOD1PM Antibodies

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A 96-well microplate was coated with sEOD1PM (25 μg/mL) in 0.1 M carbonate buffer (pH 9.6) by incubation at 4 °C overnight. The plate was washed with PBST and blocked with 0.5% sodium caseinate in PBST at 37 °C for 60 min. The plate was washed with PBST and incubated with human sera (Sigma-Aldrich) or saliva at 37 °C for 60 min. The plate was then washed with PBST and incubated with peroxidase-conjugated anti-human IgG, IgM, or IgA (1:2000; Sigma-Aldrich) in PBST containing 0.5% sodium caseinate and developed with a TMB substrate system (KPL, Gaithersburg, MD, USA). Color development was stopped with 1 N phosphoric acid, and optical density was measured at 450 nm with the absorbance reader MTP-450 (CORONA Electric, Ibaraki, Japan).
For testing the specificity of the anti-sEOD1PM antibody, an ELISA plate was coated with sEOD1PM (25 µg/mL in carbonate buffer) and blocked with 0.5% sodium caseinate in PBST before use. human sera or pooled human saliva were mixed with serially diluted competitive soluble antigen, namely sEOD1PM, CSBG, OVA, AgHWE, ASBG, or dextran, and then applied to the ELISA plate. The amount of plate-bound Ig was determined using peroxidase-conjugated anti-human IgG or IgA (1:2000).
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5

Serum Inactivation of Bacterial Cells

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Bacterial cells (∼3.5 × 105 CFU) from a mid-log culture were treated with 100 μg/ml of purified RAD2-DpK2. Human sera (Sigma-Aldrich catalog no. S7023) were prewarmed to either 37°C (active) or 50°C (heat inactivated) for 30 min and then added to enzyme-treated cells (80% final concentration) and incubated at 37°C for 3 h. Viable bacterial counts were determined before and after incubation with serum.
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6

Comprehensive Protein Characterization Methodology

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Protein integrity and purity was assessed by Sodium Dodecyl Sulphate Polyacrylamide Gel Electrophoresis (SDS-PAGE) and Western blotting using an anti-His monoclonal antibody (Santa Cruz Biotechnology). The molecular mass of T22-HA2-GFP-H6 and T22-GFP-HA2-H6 proteins was determined by Matrix-Assisted Laser Desorption Ionization Time-of-Flight (MALDI-TOF) mass spectrometry, while the volume size distribution was determined by Dynamic Light Scattering (DLS) at 633 nm in a Zetasizer Nano ZS (Malvern Instruments Limited). Additionally, fluorescence of the GFP-based nanoparticles was determined by a Varian Cary Eclipse Fluorescence Spectrophotometer (Agilent Technologies), through an excitation wavelength at 450 nm and detection at 510 nm. Protein stability, was assessed in human sera (Sigma-Aldrich) at 37 ºC for 0, 2, 5 and 24 h. Then, protein integrity was evaluated by Western blot using an anti-His monoclonal antibody (Santa Cruz Biotechnology) for the specific immunodetection of the His-tag. Additionally, Precision Plus Protein All Blue Standards (BioRad) was used to confirm the expected molecular weight of the samples.
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