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10 protocols using p acc

1

Liver Protein Expression Analysis

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Total protein was extracted from the liver of each group using protein lysis buffer (Invitrogen, Carlsbad, CA) containing phosphatase inhibitor (GenDEPOT, Barker, TX, USA). Protein extracts were resolved by 10% or 12% SDS-PAGE gels and were later transferred onto PVDF membranes (Millipore, Billerica, MA). The protein bands were detected with antibodies against pAMPK (Thr172), AMPK, pACC, ACC, PPARα, SCD1, CPT1 (Abcam, Cambridge, UK), and GAPDH (Cell Signaling Technologies, Beverly, MA) using the appropriate secondary HRP-conjugated antibodies (Cell Signaling Technologies, Beverly, MA). The blots were developed and imaged using the MicroChemi 4.2 system (DNR Bio-imaging system, Israel).
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2

Western Blot Analysis of Metabolic Regulators

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Tissues were homogenized and lysed by RIPA buffer. After centrifugation of the lysates at 12,000 g for 10 min at 4 degrees, the supernatants were collected. Equal amounts of protein were electrophoresed on SDS-polyacrylamide gel and transferred to a nitrocellulose membrane. The membrane was then preincubated with blocking solution (PBST containing 5% fat-free milk) for 2h before incubation with primary antibodies at 4 degrees overnight. The following primary antibodies were used: GADPH (1:4000; Abcam), β-actin (1:4000; Abcam), AMPK, (1:2000; Abcam). p-AMPK (1:2000; Abcam), ACC (1:2000; Abcam), p-ACC (1:2000; Abcam), SIRT1(1:2000; Abcam), PGC1a (1:2000; Abcam), NF-kB (1:2000; Abcam). After washing with PBST, the blot was incubated with secondary antibody (HRP-conjugated, 1:10,000 dilution) for 90 min and then washed and detected by an enhanced chemiluminescence detection kit (Haigene).
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3

Adipogenic Differentiation Assay

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D3G (chemical formula C21H21O12Cl, >97% purity) was purchased from Polyphenols AS (Sandnes, Norway). Dorsomorphin, AICAR, indomethacin, 3-isobutyl-1-methylxanthine (IBMX), and dexamethasone (DEX) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s modified Eagle’s medium (DMEM), bovine calf serum (BCS), trypsin-EDTA, and fetal bovine serum (FBS) were procured from Thermo Fisher (San Jose, CA, USA). CCK-8 was purchased from Dojindo Molecular Technologies (Rockville, MD, USA). Insulin was purchased from Thermo Fisher (San Jose, CA, USA). Random hexamers and the reverse transcriptase enzyme mix (GoScriptTM) were obtained from Promega (Madison, WI, USA). Monoclonal antibodies against C/EBPα, SREBP1, PPARγ, FAS, ACC, SIRT1, p-ACC, AMPK, p-AMPK, CPT-1, and horseradish peroxidase (HRP)-coupled anti-rabbit or anti-mouse secondary antibodies were purchased from Abcam (Cambridge, UK). Total RNA was extracted using an easy-spinTM Total RNA Extraction Kit (iNtRON Biotechnology, Seongnam-si, Korea) and a PRO-MEASURETM protein measurement solution, protein lysis buffer, and a Western blot detection system were purchased from iNtRON Biotechnology (Seongnam-si, Korea). The polyvinylidene difluoride (PVDF) membrane was procured from Merck (Burlington, Massachusetts, USA).
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4

Mitochondrial Function and Autophagy Regulation

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Cells and freshly isolated mitochondria were washed with cold PBS and lysed in the RIPA buffer (Sigma–Aldrich, U.S.A.). Protein concentrations were determined using the BCA Protein Assay Kit (Thermo Fisher Scientific, U.S.A.). Proteins (30 μg) were subjected to SDS/PAGE (10%) and then electrotransferred on to a nitrocellulose membrane. Transferred proteins were then incubated with primary antibodies against PGC1-α, NRF1, Tfam, LC3B I, LC3B II, p62, beclin-1, AMPK, p-AMPK, acetyl-CoA carboxylase (ACC), p-ACC, OPA1, NADH ubiquinone oxidoreductase (complex I), and succinate dehydrogenase (complex II) (Abcam, U.S.A.). β-actin, α-tubulin, and VDAC1 were loaded as the internal references. Bands were visualized using the goat anti-rabbit IgG-HRP secondary antibody (1:2000; Abcam, U.S.A.). Bands were developed using chemiluminescent substance (Thermo Scientific, U.S.A.).
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5

Protein Extraction and Western Blot Analysis

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The proteins suspension of liver tissues were obtained using a total protein extraction kit (APPLYGEN, Beijing, China) and protein concentrations were determined by the BCA protein assay kit while using BSA as a standard. Subsequently, standard western blot procedures were followed, as described elsewhere [41 (link)]. β-actin was used as an endogenous control and blots were quantified by using Image J Software (NIH, Bethesda, MD, USA). The primary and secondary antibodies used for western blot (AMPK, AMPK-p, p-ACC, ACC, CD68, and β-actin) were purchased from Abcam (Cambridge, UK) and other antibodies (CaMKKβ, NF-κβ, TGF-βR1, PPARα, SMAD2/3-P, and SMAD2/3) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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6

Antioxidant Mechanistic Analysis Protocol

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Oil red dye, hydrogen peroxide (H2O2), and N-acetyl cysteine (NAC) were purchased from Sigma-Aldrich (St Louis, MO, USA). FFA free bovine serum albumin (BSA) was obtained from Merck (Germany). Detection kits for SOD and MDA were from NJJCBIO Inc. (Nanjing, China), while commercial detection kit for triacylglycerides (TG) was taken from Beijing BHKT (Beijing, China). ROS detection kit was used from Beyotime (Haimen, Jiangsu, China). The Takara quantitative RT-PCR kit and SYBR Green Premix Ex Taq were products of Takara Biomedicals Inc. (Shiga, Japan). The primary and secondary antibodies used for Western blot (AMPK, AMPK-p, p-ACC, and β-actin) were purchased from Abcam (Cambridge, UK). Compounds C and AICAR were obtained from Tocris Bioscience (Minneapolis, MN, USA). Cytokine array kit was purchased from RayBiotech, Inc. (Norcross, Ga.) All other laboratory chemicals were of the highest purity from commercial suppliers.
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7

Cardiac Protein Expression Analysis

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Total protein was extracted from WT and db/db cardiac tissues using RIPA lysis buffer containing a protease and phosphatase inhibitor cocktail (Thermo Fisher, Waltham, MA, USA). The extracted proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes. After blocking with 5% skim milk in TBS with 0.1% Tween 20, membranes were incubated with the following primary antibodies overnight at 4 °C: primary antibodies were purchased from Cell Signaling (TGF-β1, PGC1a, NRF1, NRF2, total OXPHOS, ACC, p-ACC Ser79, ACSL1, ATGL, FOXO1, p-FOXO1 Ser256, AMPK, p-AMPK Thr172, Akt, p-Akt Ser473, mTOR, p-mTOR Ser2448, PPARγ1/2, NF-κB p65, β-Actin, and GAPDH); Abcam (GLUT4, Col1a1, and TFAM); Invitrogen (FABP3, IGFBP7, and p-SREBP1 Ser338); and Santa Cruz Biotechnology (CD36, SREBP1, MFN1, OPA1, and DRP1). After washing, the membranes were incubated with the HRP–conjugated secondary antibody (Jackson ImmunoResearch, USA), diluted in 5% skim milk, and incubated for 1 h at room temperature. Finally, the membranes were washed with Tris-buffered saline (TBS) containing 0.1% Tween 20. Immunodetection was performed using an enhanced luminol-based chemiluminescent substrate (WESTSAVE Up, AbFrontier, Korea). GAPDH and β-Actin were used as loading controls. Quantification of each band was performed using ImageJ software.
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8

Protein Expression Analysis of α-SMA, SM22α, and AMPK Signaling

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Cells were lysed radioimmunoprecipitation assay buffer (Beyotime Institute of Biotechnology) and proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to a polyvinylidene difluoride membrane (Bio-Rad, Hercules, CA, USA) that was blocked with 5% fat-free dry milk in Tris-buffered saline containing 0.1% Tween 20 (TBST) for 1 h, then incubated overnight at 4 °C with primary antibodies against α-SMA (1:200), SM22α (1:250), AMPK (1:200), p-AMPK (1:200), ACC (1:250), p-ACC (1:250), and GAPDH (1:1000) (all from Abcam). The membrane was then incubated with horseradish peroxidase-conjugated IgG for 1 h at room temperature, and protein bands were visualized with a chemiluminescence kit (Beyotime Institute of Biotechnology) and X-ray imaging system (Tanon, Shanghai, China). Signal intensity was quantified with ImageJ software.
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9

Analyzing Chondrocyte Protein Markers

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To analyze the PAI-1, p16, phosphorylated AMP-activated protein kinase (AMPK) α and phosphorylated acetyl-CoA carboxylase (ACC) proteins, C28/I2 chondrocytes were lysed in ice-cold PBS with protease/phosphatase inhibitor. Cell lysates were collected, quantitated, and employed for western analyses. For this purpose, a total of −20 µg of the proteins were loaded onto a 4–20 percentage precast polyacrylamide gel electrophoresis (PAGE) gel (Bio-Rad, USA) and blotted with specific antibodies including PAI-1 (diluted 1:2000; Abcam, USA), P16 (diluted 1:1000; Abcam, USA), p-AMPK (diluted 1:1000; Abcam, USA), AMPK (diluted 1:3000; Abcam, USA), p-ACC (diluted 1:1000; Abcam, USA), and subsequently probed with secondary antibody (diluted 1:3000; Abcam, USA). Reactive bands were detected using ChemiDoc™ reagent (Bio-Rad Laboratories, Hercules, CA, USA).
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10

Comprehensive Metabolic Assays for HFD and RC Mice

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The HFD (60% calories from fat, D12492) and RC (10% calories from fat, D12450J) were purchased from Beijing Keaoxieli Co., Ltd, China. APS (purity ≥98%) was purchased from Shanghai Yuanye Bio-technology Co., Ltd, China and metformin was purchased from TCI Shanghai Co., Ltd, China. SYBR and reagent kits for real-time PCR were purchased from Takara Bio Inc.. Antibodies against GAPDH, AMPK, GRP78, ATF6, BCL-2 and BAX were from Proteintech Group Inc., China. Antibodies against GLUT2, IRS1, p-IRS1, p-AMPK, ACC, p-ACC, AKT, p-AKT, mTOR, p-mTOR, 4EBP1, p-4EBP1, P70S6K, p-P70S6K, GSK3β, p-GSK3β, ATG5, ATG3, LC3, BECLIN-1 and β-ACTIN were acquired from Abcam. RIPA was from Biotek Corporation, Beijing, China. Kits for blood biochemistry were from Jiancheng Bioengineering Institute (Nanjing, China). Kits for G6pase and PEPCK were from Solarbio Life Sciences (Beijing, China). Insulin was from Wanbang Biochemical Pharmaceutical Co., Jiangsu, China.
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