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5 protocols using si sox9

1

SOX9 Regulation in Intestinal Cells

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Intestinal epithelial cell lines at the exponential growth phase were first digested and inoculated in a 6-well plate at a density of 1×105 cells/well, and then were incubated for subsequent transfections. The pcDNA3-Flag-SOX9 plasmid (OBiO, Shanghai, China), Si-SOX9, miR-145-5p mimic, miR-145-5p inhibitor, or corresponding negative controls (RiboBio, Guangzhou, China) were applied to cell transfection in accordance with different purposes of the respective experiments. All transfection processes were conducted using Lipofectamine™ 3000 transfection reagent (Invitrogen, Carlsbad, CA, USA) according to relevant protocol. The transfected cells were incubated for 48 h or 72 h for the subsequent analyses. In addition, the transfection efficiency was evaluated via determining the distribution and localisation of the FLAG-llabeled plasmid using immunofluorescence.
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2

Modulating miR-494 and SOX9 in NP cells

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MiR-494 mimic, miR-494 inhibitor, and their negative control (miR-Scr) were designed and synthesized by RiboBio (Guangzhou, China) and transfected into NP cells grown to 80% confluence using Lipofectamine 2000 (Invitrogen) according to the manufacturer's instructions. For SOX9 knockdown, short interfering (si)RNA against SOX9 (siSOX9) and scrambled siRNA (siScr) (RiboBio) were co-transfected with miR-494 inhibitor or miR-Scr into NP cells using Lipofectamine 2000. After 48 h, cells were harvested and used for analyses.
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3

SOX9 Regulation in Cancer Cells

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To restore miR-605 expression, agomir-605 and its negative control, agomir-NC, was obtained from GenePharma (Shanghai, China). For the knockdown assay, small interfering (si) RNAs targeting the expression of SOX9 (si-SOX9) and its scramble control, siRNA (si-ctrl), were chemically synthesized by Ribobio (Guangzhou, China). The enforced expression plasmid (pcDNA3.1) for SOX9 (pcDNA3.1-SOX9; pc-SOX9) and empty plasmid, pcDNA3.1, were generated by the Chinese Academy of Sciences (Changchun, China). The transient transfection for oligonucleotides, siRNA, or plasmid was performed using Lipofectamine 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) in accordance with the manufacturer’s protocols. The Cell Counting Kit-8 (CCK-8) assay, transwell migration and invasion assays, and sub-cutaneous xenograft mouse model were carried out at 24, 48 and 24 h after transfection, respectively. Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was carried out to measure gene expression at 48 h post-transfection, while Western blotting was conducted in transfected cells after 72 h transfection.
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4

In vitro OA model using CHON-001 cells

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Human chondrocyte cell line (CHON-001) and 293 T cells were obtained from ATCC (Manassas, VA, USA). All cells were incubated in Roswell Park Memorial Institute-1640 (RPMI-1640; Gibco, Carlsbad, CA, USA) medium supplemented with 10% fetal bovine serum (FBS; Gibco). To mimic an in vitro cell model for OA, CHON-001 cells were induced by IL-1β (10 ng/mL, Sigma Aldrich, St. Louis, MO, USA) for 24 h as instructed [29 (link)]. pcDNA-circ_0008365 (the overexpression vector of circ_0008365), miR-338-3p mimic or inhibitor (miR-338-3p or anti-miR-338-3p), siRNA against SOX9 (si-SOX9) or corresponding controls (pcDNA, miR-NC, anti-NC, and si-NC) were purchased from RiboBio (Guangzhou, China) and transfected into cells by using Lipofectamine™ 3000 kit (Invitrogen), followed by transfection for 24 h for further studies.
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5

Silencing NEAT1 in NSCLC Cells

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The siRNA of NEAT1 (si-NEAT1) and negative control siRNA (si-NC) were obtained from Ribo-bio (Guangzhou, China). Cells were seeded in 96-well Plates for 24 h before the experiment. These recombinant plasmids were transiently transfected into NSCLC cells using TransMessenger Transfection Reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions.
miR-101-3p mimics, miR-101-3p inhibitors and si-SOX9, as well as those corresponding negative controls were purchased from Guangzhou RiboBio Co. Ltd. These recombinant plasmids were transfected into NSCLC cells using Lipofectamine 2000 (Invitrogen), according to the manufacturer's protocol.
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