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4 protocols using ino80

1

Comprehensive Immunoblotting and ChIP Assay

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The following antibodies were used in this study: Ino80 (Proteintech, 24819-1-AP) and β-actin (Sigma, A2228) for Western blotting; Ino80 (Proteintech, 18810-1-AP) for immunohistochemistry staining; and Ino80 (Proteintech, 18810-1-AP), H3K4me1 (Active Motif, 39297), H3K27ac (Abcam, ab4729), Med1 (Bethyl Laboratories, A300-793A), and RNA Pol II (Santa Cruz Biotechnology, SC-899X) for ChIP.
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2

Protein Analysis of CM Samples

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The total protein was extracted from CMs with RIPA lysis buffer (Beyotime, China), and a BCA assay (Beyotime, China) was performed to quantify the protein concentrations. The equal amount of protein samples was loaded and resolved on SDS-PAGE gel, and transferred to nitrocellulose membrane (Millipore, USA). The membranes were blocked in 5% milk and then reacted overnight with primary antibodies against Ino80, Dis3, Srsf1 and GAPDH (Proteintech, USA) at 4 °C. The membranes were finally incubated with secondary antibodies for 1 h at RT and scanned with Odyssey (LI-COR Biosciences, USA).
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3

Protein Expression Analysis by Western Blot

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Cultured cells were lysed in strong RIPA buffer containing Halt Protease Inhibitor Cocktails (Thermo, Waltham, MA). Protein concentrations were measured using a BCA protein assay kit (Pierce, Rockford, IL). Primary antibodies targeting NANOG (Abcam), Ino80 (proteintech, Chicago, IL), OCT4 (Santa Cruz Biotechnology, Santa Cruz, CA), p53 (Santa Cruz Biotechnology), BAX (Abcam) and GAPDH (Santa Cruz Biotechnology) were incubated with the proteins overnight at 4°C, followed by incubation with the appropriate HRP (horseradish peroxidase)-conjugated secondary antibodies. Detection of HRP was performed using the Super Signal West Pico Chemiluminescent Substrate (Pierce).
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4

ChIP Assay for Ino80 Binding

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Chromatin immunoprecipitation (ChIP) assays were performed with normal rabbit IgG (Millipore, Billerica, MA) and Ino80 (Proteintech) antibody using the EZ ChIP kit (Millipore) according to the manufacturer's protocol. Whole-cell DNA and immunoprecipitated DNA were used for PCR assays with primers targeting sequences surrounding the binding sites. Primer sequences are provided in Table S4. Fold enrichment was calculated relative to normal rabbit IgG.
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