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3 protocols using guanosine triphosphate gtp

1

Nucleic Acid Extraction and Characterization Protocol

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Poly (acrylic acid) (PAA, MW ~5000) was purchased from Ryon Biological Technology (Shanghai, China). Polyethyleneimine (PEI, MW ~10,000) was purchased from Damas-beta. Tris (hydroxymethyl) aminomethane (Tris) was purchased from Alfa Aesar. KCl, NaCl, and MgCl2 were obtained from Aladdin reagent (Shanghai, China). Adenosine 5′-triphosphate (ATP) disodium salt solution, uridine Triphosphate (UTP), cytidine triphosphate (CTP) and guanosine triphosphate (GTP) were purchased from Sigma-Aldrich. HeLa and PC3 cells were obtained from Chinese Center for Typical Culture Collection (Wuhan, China) and cultured in DMEM (Gibco) supplemented with 10% (v/v) fetal bovine serum (FBS), 2 mg/mL NaHCO3, and 100 U/mL antibiotics 15 (penicillin-streptomycin). MCF-7 cells were purchased from KeyGEN Biotech Co. Ltd. (Nanjing, China) and cultured in RPMI-1640 (Gibco) supplemented with 10% FBS, 2 mg/mL NaHCO3, and 100 U/mL antibiotics (penicillin–streptomycin) at 37 °C in a humidified 5% CO2 atmosphere. AAO membranes were purchased from Pu-Yuan Nano Technology Co. Ltd. (Hefei, China). The thickness of AAO membrane is 65 μm. All solutions were prepared using Millipore Milli-Q water (18 MΩ cm). All oligonucleotides are synthesized and purified by Sango Biotech Co. Ltd, (Shanghai, China). The sequences are shown in Tables S2 and S3.
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2

Purification and Labeling of H-Ras and SOS Proteins

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H-RasC118S C181 (H-Ras construct containing residues 1–181 with a single cysteine at position C181 used for coupling to the bilayer, henceforth simply H-Ras), SOSCat cys-lite (residues 566–1049 with following mutations: C838A, C635A, C980S, E718C), SOSDPC (residues 198–1049), SOSHDPC (residues 1–1049), and SOSHDPC(R552G) (residues 1–1049 with R552G) of human SOS1 were expressed in E. Coli and purified as previously described22 (link). Lipids were purchased from Avanti (Alabaster, AL). TR-DHPE, BODIPY-GDP and BODIPY-GTP were purchased from Invitrogen (Carlsbad, CA). ATTO 647N-maleimide, ATTO 488-labeled guanosine diphosphate (EDA-GDP-ATTO 488) and EDA-GppNp-ATTO 488 (non-hydrolyzeable analog of guanosine triphosphate) were purchased from Jena Bioscience (Jena, Germany). Guanosine triphosphate (GTP) was purchased from Sigma-Aldrich (Saint Louis, MO) and guanosine diphosphate (GDP) was purchased from MP biomedicals (Santa Ana, CA). Biotinylated anti-Chicken IgM was purchased from Sigma (#SAB3700240) and Cy5 labeled streptavidin was from Life Technologies (#43–4316).
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3

Purification and Labeling of H-Ras and SOS Proteins

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H-RasC118S C181 (H-Ras construct containing residues 1–181 with a single cysteine at position C181 used for coupling to the bilayer, henceforth simply H-Ras), SOSCat cys-lite (residues 566–1049 with following mutations: C838A, C635A, C980S, E718C), SOSDPC (residues 198–1049), SOSHDPC (residues 1–1049), and SOSHDPC(R552G) (residues 1–1049 with R552G) of human SOS1 were expressed in E. Coli and purified as previously described22 (link). Lipids were purchased from Avanti (Alabaster, AL). TR-DHPE, BODIPY-GDP and BODIPY-GTP were purchased from Invitrogen (Carlsbad, CA). ATTO 647N-maleimide, ATTO 488-labeled guanosine diphosphate (EDA-GDP-ATTO 488) and EDA-GppNp-ATTO 488 (non-hydrolyzeable analog of guanosine triphosphate) were purchased from Jena Bioscience (Jena, Germany). Guanosine triphosphate (GTP) was purchased from Sigma-Aldrich (Saint Louis, MO) and guanosine diphosphate (GDP) was purchased from MP biomedicals (Santa Ana, CA). Biotinylated anti-Chicken IgM was purchased from Sigma (#SAB3700240) and Cy5 labeled streptavidin was from Life Technologies (#43–4316).
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