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Image studio lite software version 4

Manufactured by LI COR

Image Studio Lite Software version 4 is a powerful image analysis tool designed for researchers. It provides a user-friendly interface for visualizing, quantifying, and analyzing images obtained from various imaging platforms. The software offers a range of features, including tools for image adjustment, data analysis, and reporting.

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2 protocols using image studio lite software version 4

1

Quantitative Image Analysis of Western Blots

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Software-computer tool (Image Studio Lite Software version 4, LI-COR Biosciences) was chosen to perform pixel quantification of the images. Normalization method is used to correct for differences in protein abundance that are not relevant to the biological question being addressed. A summary of all western blot analysis is depicted on Supplementary Table 4 using the relative expression of the gene to its β-actin for each blot. All complete figures including the β-actin for each blot are shown on the annexed figures within the supporting information. Images were cut and straightened using Adobe Photoshop software CS (Berkeley, CA V21.2.12). Brightness and contrast processing were performed when needed for the whole membrane including all bands presented (controls and exposed samples to the different radiation regimes) using the “auto exposure” feature of Adobe Photoshop software CS (Berkeley, CA V21.2.12). No other processing of the images was performed. The different exposed images are shown in supplementary information for clarification.
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2

Western Blot Protein Analysis

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Cells were lysed using radioimmunoprecipitation assay buffer (25 mM Tris-HCl, pH 7.6, 150 mM NaCl, 1% NP-40, 1% sodium deoxycholate, and 0.1% SDS) with protease inhibitor cocktail (Sigma-Aldrich). The protein concentration in the cell lysates was measured with a bicinchoninic acid assay (Bio-Rad Laboratories). 30 µg of each cell lysate was run in an SDS-PAGE gel and transferred to a nitrocellulose membrane. After blocking in 4% nonfat dry milk in TBS-T solution for 1 h, the membrane was first incubated with the primary antibody at 4°C overnight, then incubated with the secondary antibody for 1 h at RT. The membranes were imaged using an Odyssey CLx imaging system (LI-COR Biosciences). For phosphorylated PDGFRα WB, CAFs and NFs were starved overnight and, the next morning, were stimulated with complete culture medium for 2 h. Cell lysates were then prepared with addition of PhosSTOP phosphatase inhibitor cocktail (MilliporeSigma) to the lysis buffer. HRP-conjugated secondary antibodies were used and detected with SuperSignal West Femto maximum sensitivity substrate kit (Thermo Fisher Scientific) via an Amersham Imager 600 (GE Healthcare). The normalized band intensities were measured with Image Studio Lite Software version 4 (LI-COR Biosciences), which were further normalized to loading controls, either β-actin or α-tubulin.
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