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Nadph

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NADPH, or Nicotinamide Adenine Dinucleotide Phosphate, is a cofactor essential for various cellular processes. It plays a crucial role in enzymatic reactions, serving as an electron donor in oxidation-reduction reactions. NADPH is a key component in several metabolic pathways, including biosynthesis, antioxidant defense, and energy production.

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593 protocols using nadph

1

NADPH Oxidase Activity Measurement

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NADPH oxidase activity in the whole kidney was determined as the oxidation of NADPH measured at 340 nm in a reaction mixture containing 50 mM Tris, 50 mM 2‐(N‐morpholino) ethanesulfonic acid (pH 7.0), 1 mM KCN to inhibit low levels of mitochondrial oxidase activity, and 150 mM NADPH (Sigma) for 1 min at 37°C.
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2

Spectrophotometric Assay of FAS Inhibition

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Activity of purified FAS complexes at 0.2 mg/ml were measured through a spectrophotometric assay monitoring the level of NADPH (Sigma-Aldrich) at 340 nm. The assay mixture contained 100 mM potassium phosphate pH 7.4, 1 mM EDTA, 0.2 mM acetyl-CoA (Sigma-Aldrich), 0.7 mM NADPH, 1 mM DTT in a 100 μl reaction volume. The absorbance at 340 nm was measured for 3 minutes, after which the reaction was initiated by the addition of 30 nmol malonyl-CoA (Sigma-Aldrich) and monitored for 15 minutes at 25 °C. To test the effect of the inhibitor on the enzymatic activity, FAS was incubated with cerulenin (Sigma-Aldrich) at room temperature for 1 h prior to the activity assay. For the positive control reactions (absence of cerulenin), DMSO was added to 1% v/v to match the highest DMSO concentration tested in the inhibitory reactions (i.e. 100 μM cerulenin). Each curve is normalized against its first point of measurement after addition of malonyl-CoA.
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3

Glutathione Peroxidase 4 Activity Assay

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The operations followed the standard protocol. Briefly, the lysis buffer (100 mM Tris, pH 7.6, 5 mM EDTA, 1 mM NaN 3, and 0.1% Triton-X 100 without oxide) and the cells were mixed; the lysates were supplemented with 0.6 U/mL of glutathione reductase (Sigma, G3664), 0.2 mM NADPH (Sigma, N7505), 3 mM GSH (Sigma, G4251), and 200 mM cumene hydroperoxide (Sigma, 247502), and the GPX4 enzymatic activity was calculated by measuring the NADPH turnover at 340 nm.
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4

Glutathione Peroxidase Activity Assay

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Glutathione peroxidase (GPx, EC 1.11.1.9) activity was evaluated by the decrease of NADPH (Sigma Chemical Co., St. Louis, MO, USA) concentration at 340 nm. The reaction medium contained 100 mM potassium phosphate buffer (Sigma Chemical Co., St. Louis, MO, USA), pH 7.7, 1 mM EDTA (Sigma Chemical Co., St. Louis, MO, USA), 2 mM reduced glutathione (Sigma Chemical Co., St. Louis, MO, USA), 0.15 U/mL glutathione reductase (Sigma Chemical Co., St. Louis, MO, USA), 0.4 mM azide (Sigma Chemical Co., St. Louis, MO, USA), 0.1 mM NADPH, and 0.5 mM tert-butyl hydroperoxide (Sigma Chemical Co., St. Louis, MO, USA) as enzyme substrate. GPx unit is defined as 1 µmol of NADPH consumed per minute and the specific activity as units/mg protein [42 (link)].
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5

NADPH Oxidase Activity Assay

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HDFs were lysed with the lysis buffer (20 mM Hepes, pH 7.2, 1% Triton X-100, 150 mM NaCl, 0.1 mM phenylmethylsulfonyl fluoride (PMSF), 1 mM EDTA, and 1 μg/mL aprotinin). After incubation for 30 min at 4°C, cellular debris was removed by centrifugation at 10,000 ×g for 30 min. NADPH oxidase in the supernatant was measured by lucigenin chemiluminescence in the presence of 500 μM NADPH (Sigma-Aldrich, St. Louis, MO) and 25 μM lucigenin (Sigma-Aldrich, St. Louis, MO) as described previously [16 (link)].
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6

NADPH-oxidase Activity Assay

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N27 cells were collected in krebs-hepes buffer and homogenized. The resultant suspension was assayed for protein concentration using the Pierce BCA Protein Assay Kit (Thermo Fisher Scientific). NADPH-oxidase activity was measured in 30 μg of extracted proteins in the presence of lucigenin (5 × 10−6 mol/L; Sigma) and NADPH (10− 4 mol/L; Sigma). Measurements were performed with an Infinite M200 multiwell plate reader (Tecan, Switzerland). No enzymatic activity was detected in the absence of NADPH.
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7

Determination of NADPH Oxidase Activity

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The cell membrane fraction was obtained from HaCaT cells using the method described in the section “Isolation of cell fractions”. Nicotinamide adenine dinucleotide phosphate (NADPH) oxidase activity was determined by the lucigenin chemiluminescence assay using 20 μM lucigenin (Sigma-Aldrich Co.) and 1 μM NADPH (Sigma-Aldrich Co.).
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8

Enzymatic Assay for IDH2 R140Q Variants

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20ng purified IDH2 R140Q and variants proteins that pre-treated with or without recombinant ACAT1 or SIRT3 in an in vitro assay were incubated with various concentrations of NADPH (0–1.5 μM; Sigma-Aldrich) and 5 mMα-KG(Sigma-Aldrich) or various concentrations ofα-KG (0–5mM; Sigma-Aldrich) and 1.5 μM NADPH(Sigma-Aldrich) at 100 μl enzyme activity assay buffer (25mM Tris-HCl (pH7.5), 10 mM MgCl2, 5mM DTT). Absorbance at 340 nm was measured every 20 seconds for 5 minutes using a Spectra Max Plus spectrophotometer (Molecular Devices). Non-linear regression analysis (Michaelis-Menten) was performed in Graphpad Prism 5.03
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9

Kinetic Analysis of Mutant IDH1 and YF Variants

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20 ng purified IDH1 and YF variant proteins that pre-treated with or without recombinant active tyrosine kinases in an in vitro kinase assay were incubated with various concentrations of NADP+ (0–200 μM; Sigma-Aldrich) or isocitrate acid (0–200 μM; Sigma-Aldrich) and 1 mM isocitric Acid (Sigma-Aldrich) or 0.5 mM NADP+ (Sigma-Aldrich), respectively at 100 μl enzyme activity assay buffer (25 mM Tris-HCl pH7.5), 10 mM MgCl2, 5 mM DTT). Absorbance at 340 nm was measured every 20 seconds for 5 minutes using a SpectraMax Plus spectrophotometer (Molecular Devices).
20 ng purified IDH1 R132H and YF variants proteins that pre-treated with or without recombinant active tyrosine kinases in an in vitro kinase assay were incubated with various concentrations of NADPH (0–10μM; Sigma-Aldrich) and 1.5 mM α-KG (Sigma-Aldrich) or various concentrations of α-KG (0–1500 μM; Sigma-Aldrich) and 15 μM NADPH (Sigma-Aldrich) at 100 μl enzyme activity assay buffer (25 mM Tris-HCl (pH7.5), 10 mM MgCl2, 5 mM DTT). Absorbance at 340 nm was measured every 20 seconds for 5 minutes using a SpectraMax Plus spectrophotometer (Molecular Devices). Non-linear regression analysis (Michaelis-Menten) was performed in Graphpad Prism 6.0.
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10

Coupled Spectrophotometric Assay for RNR

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Activity assays for wild-type α2 and the Gln294Ala and Arg298Ala mutants were performed using a continuous, coupled, spectrophotometric assay monitoring the consumption of NADPH by the Trx/TrxR system (Ge et al., 2003 (link)). All experiments were performed on a Cary Bio300 spectrometer (Agilent) with data analysis performed using the Cary WinUV Kinetics program (Agilent) and Microsoft Excel. The assay buffer consisted of 50 mM HEPES pH 7.6, 15 mM MgCl2, 1 mM EDTA, and the following substrate and effector concentrations were used: 1 mM CDP and 3 mM ATP (control for presence of activity), 1 mM CDP and 175 μM dATP (control for inactivation by dATP), 1 mM ADP and 120 μM dGTP, 1 mM GDP and 250 μM TTP, and 1 mM CDP/UDP and 1 μM dATP. Substrate, effector, E. coli Trx (30 μM), E. coli TrxR (0.5 μM), and NADPH from Sigma-Aldrich (200 μM) were mixed in assay buffer, and the reaction was initiated by the addition of α2 (0.1 μM) and wild-type β2 (1 μM) to a final volume of 120 μL. The decrease in NADPH absorbance at 340 nm was monitored over 1 min. The basal level of NADPH oxidation was monitored over 30 s prior to the addition of enzyme.
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