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94 protocols using c jun

1

Hypoxia-Induced PEA3 and c-Jun Phosphorylation

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WI-38 cells were seeded onto 10-cm dishes. After reaching confluence, cells were subjected to hypoxia (1% O2) for the indicated time intervals. Cells were then harvested, lysed in 100 μL of IP lysis buffer (Thermo Fisher Scientific, MA, USA), and centrifuged. The supernatant was then immunoprecipitated with a specific Ab against PEA3 (Santa Cruz, CA, USA) or c-Jun (Santa Cruz, CA, USA) in the presence of protein A/G beads at 4 °C overnight. The immunoprecipitated beads were washed three times with IP lysis buffer. The immune complex was analyzed through 8% SDS-PAGE, transferred to PVDF membranes, and then subjected to immunoblot analysis with Abs specific for serine (Abcam, Cambridge, UK), PEA3 (Santa Cruz, CA, USA), or c-Jun (Santa Cruz, CA, USA).
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2

Western Blot Analysis of Nrf2, HO-1, and NF-κB Signaling

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Cell extracts were prepared in RIPA buffer (Beyotime, China). Nuclear extracts were prepared with a Nuclear Extract Kit (Thermo Scientific, USA) according to the manufacturer's recommendations. Then, Western blot analysis was performed according to standard procedures. Antibodies were used at the following concentrations: Nrf2 (Abcam), 1 : 1000; HO-1 (Santa Cruz), 1 : 500; c-jun (Santa Cruz), 1 : 1000; Histone H2B (Abcam), 1 : 1000; GAPDH (Santa Cruz), 1 : 1000; p65 (Santa Cruz), 1 : 1000; c-jun (Santa Cruz), 1 : 1000.
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3

Western Blot Analysis of Endometrial Cancer

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Endometrial cancer cells were lysed with cold lysis buffer, and proteins were extracted followed by quantification of protein concentration. Equal amounts of proteins from each group were purified with 10% SDS-polyacrylamide gels, and then transferred to a polyvinylidene difluoride (PVDF) membrane, followed by blockading of non-specific binding by incubation with 5% skim milk over 1 h. The membrane was next incubated with primary antibodies overnight at 4 °C, and then treated with horseradish peroxidase-conjugated secondary antibody for 1 h. The ECL reagent (Millipore Corp.) was used for detecting antibody-reactive bands. The housekeeping proteins α-tubulin or β-actin was used as loading control. Primary antibodies against POLD1, JNK, p-JNK, c-JUN, and FOSL1 were purchased from Santa Cruz Biotech (Dallas, USA); primary antibodies against PGK1, HSP90, ERK, p-ERK, AKT, p-AKT, DNMT1, DNMT3A, DNMT3B, and SPARC were purchased from Cell Signaling Technology (Boston, USA); primary antibodies against Bcl-xL, Mcl-1, and Bax were purchased from Abcam (Cambridge, UK).
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4

Investigating Oxidative Stress Signaling

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Primary antibodies against gp91phox/NOX2, p47phox, acetylated α-tubulin, p65, IkB, c-fos, and c-jun were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Total-ERK, total-p38, total-JNK, phosphor-ERK, phosphor-p38, phosphor-JNK, β-actin, and HDAC6 were purchased from Cell Signaling Technology (Beverly, MA, U.S.A.). Hindsiipropane B was synthesized from commercially available starting materials with the Wittig-Horner reaction, Claisen-Schmidt condensation and hydrogenation as key steps (14 (link)). 10 mM stock solution of hindsiipropane B was prepared in dimethyl sulfoxide. Oligonucleotide primers (HDAC6, CCL2, CXCL8, CXCL10, Nox2, p22phox, p47phox, and β-actin) (Bioneer, Seoul, Korea) were obtained from commercially.
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5

Comprehensive Western Blot Analysis

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Western blot was performed as described before (22 (link)). Primary antibodies were used as follows: Bcl2 (1:200, Cell Signalling Technology (Frankfurt am Main, Germany)), BAX(1:1000, Cell Signalling Technology), c-Jun(1:100, Santa Cruz Biotechnology (Dallas, USA)), p-c-Jun(1:100, Santa Cruz Biotechnology), Lamin B1 (0.1 µg/ml, Abcam). β-actin(1:5000, Sigma Aldrich) and GAPDH (1:5000, Sigma Aldrich) act as the internal control. Images were acquired by FUSION FX (Vilber Lourmat Deutschland GmbH, Weinheim, Germany).
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6

Western Blot Analysis of Stress Response Signaling

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U266 and U937 cells (1 × 106 cells/mL) were treated with indicated concentrations of SM (25 or 50 µg/mL) for 24 h. Then, the cells were lysed with RIPA buffer (1 M EDTA, 1 mM Na3VO4, 1 mM NaF, 50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% NP-40, 0.25% sodium deoxycholic acid) containing a protease inhibitors cocktail (Amresco, Solon, OH, USA). The protein supernatant was collected and quantified for protein concentration by using an RC DC protein assay kit II (Bio-Rad, Hercules, CA, USA). The proteins (30 µg) were separated via SDS-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes that were blocked with 5% skim milk in Tris-buffered saline with 0.05% Tween 20 and incubated with the required antibodies. Primary antibodies, including cleaved PARP (1:1000, 89 kDa), CHOP (1:500, 27 kDa), P-eIF2α (1:500, 38 kDa) (Cell Signaling, Beverly, MA, USA), P-ATF4 (1:500, 39 kDa) (Thermo Fisher, Waltham, MA, USA), P-PERK (1:500, 125 kDa) (Thermo Fisher, Waltham, MA, USA), c-Jun (1:1000, 39 kDa), and β-actin (1:1000, 43 kDa) (Santa Cruz, Dallas, TX, USA), were used at a 1:500~1000 dilution (5% bovine serum albumin) and secondary antibodies at a 1:1000 dilution (5% skim milk) (Santa Cruz, Dallas, TX, USA). After detected protein bands were visualized by Hybond ECL (Amersham Pharmacia, Piscataway, NJ, USA), the blots were scanned.
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7

Western Blot Analysis of Cell Signaling

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Western blot analysis was performed as described previously [37 (link)]. Primary antibodies used were as follows: E-cadherin, phos-cJun and cJun, Ets1 were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA); CD44, ZEB1, Egr-1, phos-IGF1Rβ, IGF1Rβ, phos-EGFR, and EGFR were purchased from Cell Signaling Technology (Beverly, MA); Vimentin was from Life Technologies (Carlsbad, CA). Horseradish peroxidase-conjugated secondary antibodies were purchased from Amersham Biosciences (Piscataway, NJ).
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8

Cell Signaling Pathway Profiling

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All cell culture reagents were purchased from Gibco-Invitrogen (Carlsbard, CA, USA). Cell culture dishes and other plasticware were obtained from Nalgene Nunc (Rochester, NY, USA). Salts and buffers were purchased Sigma (St. Louis, MO, USA). Leptomycin B (LMB), α-tocopherol, LPS O111:B4 and (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) tetrazolium (MTT) were obtained from Sigma-Aldrich. Primary antibodies used in protein detection of CALM, α-adaptin, β-adaptin, eps 15, c-Myc, c-Jun, c-Abl and SR-B1 as well as secondary antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA, USA) and Abcam (Cambridge, UK). Fluorescent conjugates of LPS BODIPY FL, and 6-carboxy-2′,7′-dichlorodihydrofluorescein diacetate for ROS detection were obtained from Thermo Fisher Scientific (Waltham, MA, USA).
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9

Signaling Pathway Modulation in Cell Assays

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LicA was purchased from Sigma (St. Louis, MO), and a 100 mM stock solution was prepared in dimethyl sulfoxide (DMSO) and stored at −80°C. DAPI and MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide) were purchased from Sigma (St. Louis, MO). Antibodies against p-ERK1/2, ERK1/2, p-p38, p38, p-JNK, JNK1/2, uPA, ATF-2, NF-κB (p65), c-jun, c-fos, β-actin, and si-MKK4 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Horseradish peroxidase-conjugated anti-mouse, anti-goat and anti-rabbit secondary antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). The JNK1/2 inhibitor, SP600125, was purchased from Calbiochem (San Diego, CA).
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10

Protein Expression Analysis in Cell Lysates

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Collected cell was rinsed twice with phosphate buffered saline (PBS) and then lysed in ice-cold RIPA lysis buffer containing 1% protease inhibitors and phosphatase inhibitor). Total extracted proteins were separated by electrophoresis, and protein bands were transferred to nitrocellulose membranes by transfer. After blocking in 6% bovine serum albumin for 2 h, membranes were reacted with an ACE2, TMPRSS2, PI3K, phosphorylated (p)AKT, AKT, p-mitogen-activated protein kinases (p-MAPKs; pJNK, p-p38, pERK), MAPKs (JNK, p38, ERK), c-jun, c-fos, or GAPDH antibodies (Santa Cruz, CA, USA) diluted 1: 500 in PBS containing Tween-20 overnight at room temperature. Membranes were washed and reacted for 30 min with horse radish peroxidase-conjugated secondary antibody. Proteins were visualized using an enhanced chemiluminescence kit (Amersham Corp. Newark, NJ, USA).
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