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23 protocols using fluoview fv1000 confocal

1

Duolink PLA Imaging Protocol

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PLA was performed using the Duolink® In-Situ Red Starter Kit Mouse/Rabbit purchased from Sigma Aldrich (Missouri, USA). Treated cells on coverslips were fixed with 4% paraformaldehyde and permeabilized using 0.2% Triton-X. Apart from overnight primary antibody incubation, subsequent steps were performed according to manufacturer's protocol. Prepared samples were subsequently imaged for red signals using the Olympus Fluoview FV1000 confocal microscope (Tokyo, Japan).
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2

Immunofluorescence Cell Fixation Protocol

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Twenty-four h after transfection the cells were fixed with 3% paraformaldehyde in phosphate buffered saline (PBS) for 15 minutes at room temperature. Cells were then washed with PBS three times, fixed with 3% paraformaldehyde (PFA), and the coverslips were mounted onto microscope slides. Samples were visualized using a Fluoview FV1000 confocal laser-scanning microscope (Olympus).
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3

Immunofluorescence imaging of endothelial cells

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Cells cultured in the FEPM devices were fixed with 4% paraformaldehyde (PFA, Nacalai Tesque, Kyoto, Japan) for 20 min, washed with PBS, and permeabilized with 0.1% Triton X-100 (Sigma-Aldrich, St. Louis, USA) for 15 min. The cells were then incubated with blocking buffer containing 1% bovine serum albumin (BSA, Sigma-Aldrich) for 30 min at room temperature and incubated with antibodies directed against vascular endothelial (VE)-cadherin (Abcam, ab33168, dilution 1:200, Cambridge, UK) or Claudin (Abcam, ab15098, dilution 1:200) overnight at 4 °C, followed by PBS washes. Subsequently, Alexa 568-conjugated secondary antibody (Abcam, ab175471, dilution 1:500) was introduced into the channels and incubated for 1 h at room temperature. The cells were co-stained with 4’,6-diamidino-2-phenylindole (DAPI, Invitrogen, D1306, Waltham, USA). Cross-sectional images were obtained at 2 µm intervals in the vertical direction using a confocal microscopy (FluoView FV1000 confocal, Olympus, Tokyo, Japan) with the 10× objective.
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4

Subcellular Localization of MhNRAMP1

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The open reading frame sequence of MhNRAMP1MhNRAMP1 was obtained using the NR1-F and NR1-R primers (Table S1) and was then cloned into the pROKII-GFP vector. Fluid from Agrobacterium containing the MhNRAMP1-GFP fusion vector or pROKII-GFP control vector was infiltrated into the WT tobacco leaves (Sheludko et al., 2007 (link)). The infiltrated tobacco was cultured in the dark for 2 d, and then the infected leaves were cut and observed under a Fluo-View FV1000confocal laser scanning microscope (Olympus, Japan).
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5

Cellular ER Localization Imaging

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KBM5, K562, KCL22, and LAMA84 cells were incubated with BSN and cells were stained by ER-Tracker Red (1 μM) for 30 min and DAPI (10 μg/mL) for 30 min. Then, the cells were detected by Olympus FluoView FV1000 confocal micro-scope (Tokyo, Japan).
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6

Retinal Immunohistochemistry Quantification

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Details of primary and secondary antibodies used for immunohistochemical labeling can be found in Supplementary Table 1. Representative images from the superior, central and inferior aspect of sagittal retinal cryosections collected from the central, nasal and temporal regions of each eyecup (Figure 1a) were captured using a confocal laser scanning microscope (Olympus FluoView fv1000 Confocal, Center Valley, PA, USA) at × 40 magnification. Slides labeled with cone arrestin (hCAR) and GFP antibodies were used for counting purposes with regions overlying retinal vasculature avoided. Identifying information was masked, images randomized and retinal cells counted by a single observer (RFB). For each image, separate counts were produced for: all DAPI stained nuclei within in the outer nuclear layer (ONL), GFP-labeled ONL nuclei, hCAR-labeled ONL nuclei and GFP-labeled ONL nuclei co-labeled with hCAR.
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7

Confocal Imaging of Nematode Anatomy

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Images of the ventral cord, the reproductive tissues, and genitalia were acquired using an Olympus Fluoview FV1000 confocal microscope with a 20X objective. ImageJ was used to stitch the overlapping images together. All other images were acquired using a Zeiss LSM 700 confocal microscope. For the genitalia, lambda stacks from 490 to 600 nm at 20 nm intervals were acquired. The autofluorescence signals were unmixed from the 488 nm signals using the linear unmixing algorithm in the Zen Black software.
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8

Lysosomal Visualization in Cell Cultures

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Cells cultured to 60–70% confluence were subjected to different stimuli under reduced serum (2%) DMEM medium, followed by incubation with 50 nM LysoTracker Red DND-99 (Life Technologies, Grand Island, NY) for 1 h. Cells were then washed thoroughly with filtered PBS, mounted on glass slides, and viewed under Olympus FluoView FV1000 confocal laser scanning microscope.
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9

Live Confocal Imaging of Embryos

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Confocal images were acquired on an Olympus Fluoview FV1000 confocal laser scanning microscope with 40×/1.35 NA or 60×/1.42 NA objective for fixed specimens. Time-lapse imaging was performed on a CSU10b Yokogawa spinning disk confocal from Zeiss and Solamere Technologies Group with 63×/1.4 NA objective. Embryos were imaged after dechorionation and placement on a gas-permeable membrane in Halocarbon 27 oil. Live imaging was performed using exposure settings of 100–350 ms and images were acquired every 1 s.
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10

Immunofluorescence Imaging of C-terminal Tagged Trypanosoma Proteins

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Preparation of C-terminal in situ-tagged TbCIA1-V5, TbCIA2A-V5, TcCIA2B-V5 and TbMMS19-V5 for confocal imaging was performed as described elsewhere, with minor modifications [88 (link)]. Cells were fixed with 4% (w/v) paraformaldehyde in phosphate buffered saline (PBS), permeabilised with 0.2% (v/v) Triton X-100 in PBS on microscopy slides and then probed with primary antibodies in PBS/gelatin. Monoclonal α-V5 (Life Technologies) and polyclonal anti-TbENO antibodies were used at 1:1000 and 1:2000 dilution, respectively. As secondary antibodies, Alexa Fluor 488 anti-mouse and Alexa Fluor 555 anti-rabbit (Life Technologies) were used. DNA was visualized using ProLong Gold antifade reagent with DAPI (Life Technologies). Confocal microscopy was performed using an inverted IX81 motorized FluoView FV1000 confocal (Olympus) microscope and detection was carried out with FV1000 software (Olympus). Image analysis was performed using Magic Montage plugin for ImageJ [96 (link)] and FIJI [95 (link)].
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