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19 protocols using a3562

1

Western Blot Protein Detection

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Polyacrylamide gels were equilibrated in transfer buffer (48 mM Tris, 39 mM glycine, 1.3 mM SDS, 20% methanol) for 20 min. A polyvinylidene difluoride (PVDF) membrane was activated in 100% methanol for 1 min. Filter paper and activated PVDF membranes were saturated in transfer buffer and proteins transferred using a Trans-Blot SD Semi-Dry Transfer Cell (Bio-Rad). The membrane was washed in TBST (10 mM Tris-Cl, 200 mM NaCl, 0.1% Tween 20, pH 7.5), blocked in 5% bovine serum albumin, and probed overnight at 4° using 1:2000 mouse anti-H3K9me2 diluted in blocking solution (ab1220; Abcam) or 1:4000 goat anti-tubulin (E7; Developmental Studies Hydrinoma Bank). After washing with TBST, the membrane was incubated with alkaline-phosphatase-conjugated secondary antibodies (A3562, goat anti-mouse; Sigma, or A4062, rabbit anti-goat; Sigma), washed and developed in 100 mM diethanolamine, 100 mM NaCl, 5 mM MgCl2, pH 9.5 containing 33 µg/ml nitroblue tetrazolium (NBT) and 165 µg/ml 5-bromo-4-chloro-3-indolyl phosphate (BCIP). Signals were quantified by ImageJ.
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2

Immunohistochemistry of Amylin, GFAP, and MBP

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We used brain tissues from humans, HIP, WT and AKO rats. Tissues were processed as previously described6 (link),29 (link). Antibodies against amylin (1:200, T-4157, Bachem-Peninsula Laboratories, CA), glial fibrillary acidic protein (GFAP; 1:600, MAB360, Millipore, MA) or myelin basic protein (MBP; 1:5,000, AMAB91064, clone CL2829, Sigma, MO) were the primary antibodies. Anti-mouse or anti-rabbit IgG (1:50, A3562, A3687, Sigma, MO) were secondary antibodies. The specificity of the amylin antibody in both human and rat brain tissues was established in previous studies6 (link),7 (link),29 (link).
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3

Pancreas Tissue Preparation and Immunohistochemistry

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Pancreas was prepared by disposing the head of the pancreas on smoking paper and fixing it with 10% formalin along with the rest of the organs in paraffin cassettes. Samples were incubated overnight in formalin at room temperature and processed for paraffin embedding. Sections of 3 μm were de-paraffinized, rehydrated and antigen retrieved by using 0.1 M sodium citrate buffer (pH 6.5). After blocking endogenous peroxidase using 3% H2O2 (in water) for 10 minutes, sections were then blocked with 1:200 goat serum in PBS/0.2% Triton for 1 hour at room temperature. Furthermore, sections were incubated with primary antibodies diluted in PBS/0.2% Triton overnight at 4°C. Slides were washed twice in PBS and Vectastain ABC kit (PK-4001 for rabbit; PK-4002 for mouse; PK-4005 for goat) was used for secondary antibody. Sections were washed twice in PBS and incubated with 33-diaminobenzidinetetracloride (DAB) (Dako, K346811). For double staining, anti-Mouse IgG (whole molecule)-alkaline phosphatase antibody produced in goat (A3562, Sigma-Aldrich) and SIGMAFAST Fast Red TR/Naphthol AS-MX kit were used (F4648, Sigma-Aldrich). Counterstaining was performed with hematoxylin.
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4

Placental Protein Expression Analysis

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Around 10–15 nuclear subfractions from each of the control, early, and late preeclamptic placenta groups were pooled randomly within each group. The same procedures were used for the cytoplasmic subfraction and for total homogenates. The protein concentration was measured by fluorescence. The samples were loaded onto a 10% SDS-PAGE gel and separated under reducing conditions. Following this, they were transferred to a PVDF microporous membrane (Merck Millipore, Billerica, MA). In the next step, the membrane was incubated with 5% nonfat milk in TBST buffer (250 mM Tris-HCL pH 7.6, 1.5 M NaCl, 0.01% Tween) for one hour at room temperature, and then overnight at 4°C with a primary antibody diluted in 1% nonfat milk in TBST buffer: 1 : 500 for IKBKG (MA5-15155, Thermo Scientific), 1 : 500 for Lamin A/C (MA3-1000, Thermo Scientific), and 1 : 1000 for GAPDH (MA5-15738, Thermo Scientific). Following incubation, the membrane was washed in TBST buffer, incubated for one hour at room temperature with labeled alkaline phosphatase (A3562, Sigma-Aldrich; dilution 1 : 10000 in 1% nonfat milk in TBST) secondary antibody, and again washed. The analysis was then performed using an ECL detection kit according to the manufacturer's instructions. The optical density of bands was analyzed using the ImageJ software [26 ].
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5

Western Blot Protein Detection Protocol

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After electrophoresis, proteins were transferred to nitrocellulose membranes and membranes were then blocked overnight in 5% nonfat milk in T-TBS (10 mM NaCl, 20 mM Tris HCl and 0.05% Tween 20). Primary antibodies were diluted in 5% nonfat milk in T-TBS as follows: monoclonal anti-pUS11 (1:1000), chicken polyclonal antibody anti-pUL34 (1:1000) (Roller et al., 2000 (link)), rabbit polyclonal anti-US3 (kind gift of Bernard Roizman) (1:500), mouse monoclonal anti-gC (1:1000) (Virusys, H1A022), mouse monoclonal anti-gD/DL6 (1:5000), mouse polyclonal anti-gB/SS55 (1:500) (kindly provided by Gary H. Cohen and Roselyn J. Eisenberg, University of Pennsylvania), monoclonal mouse anti-GAPDH (1:1000) (Millipore, MAB374), monoclonal mouse anti-scaffold (1:1000) (AbD serotech, MCA406), mouse anti-α-tubulin (1:1000) (Li-COR, 926–42213), polyclonal rabbit anti-GFP (Invitrogen, A6455). Secondary alkaline phosphatase conjugated anti-mouse (Sigma, A3562), anti-rabbit (Sigma, A3687) and anti-chicken (Aves Lab, AP1001) antibodies were incubated with the appropriate blot for 1 h.
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6

CsgC Binding Assay on Nitrocellulose

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Two µL samples were spotted on a nitrocellulose membrane and air dried. Membrane blocking for non-specific binding was carried out with a 10% (w/v) skimmed milk solution in PBS for 10 min. CsgC was added (0.4 mM in 0.1% (w/v) milk in PBS) for 1h shaking at 37°C to allow binding. Bound CsgC was detected using a mouse anti-strep monoclonal antibody (AbD Serotec; MCA2489; 1:1000 dilution) as primary and an anti-mouse IgG alkaline phosphatase conjugated (Sigma-Aldrich; A3562; 1:5000 dilution) as secondary antibody.
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7

Quantifying CsgA Amyloid Fiber Assembly

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Mature CsgA fibers were centrifuged for 90 min at 20,000 g to pellet fibers. The supernatant was loaded on a 10 kDa or 30 kDa cutoff spin concentrator (Amicon®Ultra) and the flow through was probed for the presence of CsgA in ELISA. TEM samples were prepared to visually inspect for fibers. As a concentration standard, freshly desalted CsgA was used. 50 μL of two fold dilution series in MES were coated on 96-well Maxisorp microtiter plates (Nunc) for 30 min at 37°C. Wells were blocked for 45 min at 37°C with 10% skimmed milk powder in PBS prior to incubation with the primary anti-His mAb antibody (AbD Serotec; MCA1396; 1:500 dilution) for 1h at 37°C. Wells were subsequently washed and bound antibodies were detected by incubation with an anti-mouse IgG alkaline phosphatase conjugated secondary antibody (Sigma-Aldrich; A3562; 1:500 dilution) at 37°C for 1 h. Binding was revealed using p-dinitrophenylphosphatase (p-DNPP) as substrate. Absorbance values were measured at 405 nm.
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8

Immunoblotting of Salivary Proteins

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A volume of 10 µL of both saliva and salivary gland extracts, as well as 1.5 µg of recombinant IrSPI protein as positive control, were analyzed on 4–15% acrylamide gels under reducing conditions (Mini protean TGX stain-free gels, Bio-Rad, Hercules, CA, USA) followed by UV detection (ChemiDoc, Bio-Rad, Hercules, CA, USA), or were immunoblotted with sera from mice or rabbits after IrSPI immunization or tick infestation, respectively. Transfer to nitrocellulose membranes was performed using the transblot turbo (Bio-Rad) followed by saturation in TBS-5% milk for 1 h at RT and incubation for 1 h at RT with primary antibodies diluted in TBS-5% milk (1/1000 dilution for mice immune serum and 1/100 for rabbit serum). After three washes in TBS-5% milk, antibody binding was detected with the BCIP/NBT Color development system (Roche), using either anti-mouse or anti-rabbit alkaline phosphatase-conjugated antibodies (A3562 or A3687, respectively; Sigma-Aldrich) diluted 1:7500 in TBS-5%. Results were analyzed with the ChemiDoc instrument (Bio-Rad) and the accompanying ImageLab 1.5 software (Bio-Rad).
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9

Enzyme-Linked Immunosorbent Assay for Protein Detection

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Isolated proteins from the tissue samples were coated overnight at 4 °C onto NUNC Maxisorp enzyme-linked immunosorbent assay (ELISA) plates at 2 µg/mL and 100 µL/well. The coating buffer was 0.1 M NaHCO3, pH 9. The following day, the wells were washed with PBS supplemented with 0.01% Tween, and the residual binding sites were blocked with 5% PBS-milk. The wells were washed again, and 100 µL primary antibodies (1:2000; same as those used during the immunoblotting) were put into each well. After 1 h incubation at room temperature, the wells were washed again and secondary anti-mouse (A3562, Sigma Aldrich) and anti-rabbit (A3687, Sigma Aldrich) IgG whole molecule alkaline phosphatase antibodies produced in goat were prepared at 1:2000 dilution in 1% PBS-milk, and were applied (100 µL/well). After 1 h incubation at room temperature, the wells were washed again, and 100 µL/well alkaline phosphatase substrate (P4744; Sigma Aldrich) was added. Signals were measured using a microplate reader (Synergy H4 Hybrid; BioTek, Winooski, VT, USA) at 405 nm.
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10

Immunohistochemistry of Ischemic CRVO

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Enucleated eyes from two female patients (88 and 61 years old) with severe ischemic CRVO followed by neovascular glaucoma were investigated for expression of the proteins that showed higher concentrations in the vitreous than in blood. Sections (5 μm) of paraffin embedded eyes were dewaxed and demasked for 20 min in 100 mM sodium citrate, pH 6.0, in a steamer. After transfer to TBST (50 mM Tris / HCl pH 7.6, 0.9% NaCl, 0.02% Tween 20), sections were blocked with Ultra V Block (Lab Vision at medac GmbH, Wedel, Germany) and incubated with antibodies as listed in Table 2 for 3 h. After washing in TBST, an AP-labelled goat anti-mouse secondary antibody (A3562, Sigma-Aldrich, Taufkirchen, Germany) was applied for 1 h, or a biotin-labelled goat anti-rabbit secondary antibody (71-00-30, KPL, Gaithersburg, MD, USA) was applied for 1 h followed by streptavidin-coupled AP (71-00-45, KPL) for 1 h. Slides were washed and AP was made visible by the Vector Red AP Substrate Kit I (SK-5100, Vector Labs at Axxora, Lörrach, Germany). Sections were counter-stained with hematoxylin.
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