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In situ cell death detection pod kit

Manufactured by Roche
Sourced in United States, Germany, Switzerland

The In Situ Cell Death Detection POD Kit is a laboratory equipment product designed to detect and analyze cell death in biological samples. It provides a comprehensive solution for the detection and quantification of apoptosis, necrosis, and other forms of cell death. The kit includes reagents and materials necessary for performing the assays, enabling researchers to obtain reliable and consistent results in their studies.

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21 protocols using in situ cell death detection pod kit

1

Histopathological Analysis of Lung Tissue

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Left lungs were fixed by perfusion with 0.1 M phosphate buffered saline (PBS; pH 7.4) containing 4% paraformaldehyde (PFA). Trachea was ligated with a surgical suture, and lungs were incubated in fresh 4% PFA-PBS solution on ice for 4–5 h. The lungs were paraffin-embedded for obtaining 5 μm sections which were then mounted onto poly-L-lysine-coated slides (Paul Marienfeld GmbH&Co., Lauda-Konigshofen, Germany), stained with standard haematoxylin-eosin and Masson’s trichrome techniques for histopathologic evaluations and with ABC technique for lamellar body membrane protein (LBMP) expression as described previously [15 (link)–17 (link)].
Apoptosis was evaluated by Terminal Deoxynucleotidyl Transferase dUTP Nick End Labeling (TUNEL) technique using in situ cell death detection POD kit (Roche Molecular Biochemicals, Mannheim, Germany) as described previously [15 (link)].
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2

Retinal Cell Death and Morphology Analysis

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Rats on the four experimental groups were sacrificed 6 days postpartum (n = 4 per experimental group). Animals were decapitated. After enucleating, anterior segments of the eyes, including the lens, were discarded, and the posterior segments of the eyes containing the retinas were fixed in 4% paraformaldehyde in 0.1 M pH 7.4 phosphate buffer at 4°C for 48 h. Tissues were dehydrated and paraffin-embedded. Tissue sections (5 μm-thick) were stained for terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) with the in situ Cell Death Detection POD Kit (Roche, Basel, Switzerland), following manufacturer’s instructions. Visualization of immunoreactivity was performed with 0.03% 3,3′diaminobenzidine (Sigma Co, St. Louis, MO, USA), 3% nickel ammonium sulphate and 0.01% hydrogen peroxide diluted in 0.1 M buffer acetate, yielding a black product.
The animals used for electroretinography were intraperitoneally anesthetized with ketamine/xylazine and intracardially perfused with the same fixative. The posterior segments of the eyes were paraffin-embedded, sectioned, and stained with hematoxylin-eosin to count the number of ganglion cells and to measure the thickness of the most inner layers of the retina (IR), which includes the internal limiting membrane, the retinal optic nerve fiber layer, and the ganglion cell layer (GCL), as reported (Rey-Funes et al., 2013 (link)).
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3

Apoptosis Detection in Prostate Tissue

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The prostate tissues in each group were dewaxed with xylenes and rehydrated through an ethanol series. Tunnel reactions were performed with the In Situ Cell Death Detection POD Kit (Roche USA) according to the manufacturer's protocol. The prostate tissues after the Tunnel reactions were dehydrated, mounted, and examined under a microscope.
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4

Immunohistochemical Analysis of Tumor Samples

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Orthotopic tumors were fixed in 10% formalin and embedded in paraffin. H&E staining and immunohistochemistry were performed using 5 µm thick sections [41] (link). The following antibodies were used: Ki67 (Novacastra Leica Microsystems, Buffalo Grove, IL), cleaved caspase 3 (Asp175, Cell Signaling Technology, Danvers, MA), and CD34 (MEC 14.7, Abcam, Cambridge, MA). Sections were incubated in HRP-labeled secondary antibody and staining was detected by DAB (Dako, Carpinteria, CA). TUNEL assay was performed using the In Situ Cell Death Detection POD Kit (Roche, Indianapolis, IN) according to the manufacturer’s protocol. Images were taken using an Olympus BX60 microscope (Olympus, Center Valley, PA) equipped with a QImaging EXI Blue camera and ImagePro software (Media Cybernetics, Atlanta, GA).
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5

Apoptosis Analysis in Mouse Hair Follicles

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To measure apoptotic cells in mouse hair follicles, terminal deoxynucleotidyl transferase-mediated digoxigenin-dNTP nick end-labeling (TUNEL) staining was performed following the recommendations of the manufacturer (In Situ Cell Death Detection, POD Kit (Roche,11684817910)). Deparaffinized skin tissue sections were randomly taken from each group and treated with 20 μg/ml proteinase K for 25 min at 37℃ to strip proteins from nuclei, and then rinsed three times with PBS (pH = 7.4). Inactivation of endogenous peroxidase was performed by incubating with 3% H2O2 for 15 min. After hematoxylin counterstaining for 3 min, the normal cell nuclei were stained blue, and the TUNEL positive cell revealed by DAB were brownish yellow. All sections were examined immediately after the reaction and photographed with microscope (Nikon, ECLIPSE E200). For quantitative analyses, the number of TUNEL positive or Ki-67 positive cells was counted by using ImageJ software.
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6

Photoreceptor Apoptosis Quantification

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Terminal deoxyuridine triphosphate nick-end labeling (TUNEL) assay was conducted using the in situ cell death detection POD Kit (Roche Diagnostics GmbH, Mannheim Germany). Apoptotic index (AI) of the outer nuclear layer (ONL) was calculated as (number of TUNEL-positive nuclei/total number of photoreceptor cell nucleix100).
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7

Apoptosis Analysis in RF-EMF-Exposed eNSCs

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Cell apoptosis was analysed by TUNEL and Hoechst 33342 staining. The cultured eNSCs were exposed to a 4 W/kg RF-EMF for 3 days. The cells were then dissociated and plated onto poly-L-lysine-coated round coverslips (12 mm in diameter) at a concentration of 1.0 × 105 cells/ml. Six hours after attachment, the eNSCs were harvested and fixed with 4% paraformaldehyde for 20 min. Then, the cells were rinsed in PBS and were stained with TUNEL or Hoechst 33342.
The TUNEL assay was performed using an in situ cell death detection POD kit (Roche Diagnostics Corp., USA) following the manufacturer's instructions. TUNEL-positive cells were counted in four non-overlapping fields per coverslip using a 40× objective. For each condition, more than 1000 cells in 12 coverslips from four independent experiments were counted. Data were converted to percentages of the total cell numbers.
For nuclear morphology staining, Hoechst 33342 (Sigma-Aldrich, USA) was applied to the cells at a concentration of 5 μg/ml for 30 min at 37°C. Then, the cells were washed with PBS and examined under a Leica fluorescence microscopy (Leica CTR6000, Germany). Apoptotic nuclei were identified by morphological changes, such as chromatin condensation and nuclear fragmentation. Data were obtained as described in the TUNEL assay section.
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8

Quantifying Cerebral Apoptosis in Rats

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Rats were perfused alive with 4 °C normal saline and decollated. Right cerebral tissues were fixed in paraformaldehyde (40 g/L) overnight, embedded and sectioned. Sections were processed for the TUNEL assay using In-Situ Cell-Death Detection (POD) kit, (Roche, Penzberg, Germany) according to the manufacturer’s instructions to reveal the degree of apoptosis in cerebral tissues. The investigators were blinded to the animal grouping. For each rat, four photographs were randomly selected. The apoptotic rate was obtained by counting the TUNEL positive cells compared to all the visible cells. A mean value was calculated from four values and the final values were subjected to statistical analysis.
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9

Apoptosis Measurement in Ovarian Follicles

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The In Situ Cell Death Detection POD kit (Hoffman-La Roche Ltd., Basel, Switzerland) was used to measure apoptosis according to the manufacturer's instructions. Terminal deoxynucleotidyl transferase dUTP nick end labeling-positive GCs were determined by counting the GCs with dark brown nuclear or apoptotic bodies. For each ovary, we randomly chose five inconsecutive slides for staining, and the antral follicles were evaluated. Five hundred GCs from five random areas (500 × 5 fields) were counted for each ovary (one random area per slide), and the average ratio was described as the apoptotic index (AI). This analysis was performed at ×400 original magnification by light microscopy (BX-71, Olympus Co., Tokyo, Japan) equipped with computer-controlled digital camera and imaging software DP2-BSW (Olympus Co.).[22 (link)]
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10

Apoptosis Analysis in Neuronal Cells

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The differentiating eNSCs were plated onto poly-L-lysine-coated coverslips and exposed to ELF-EMF for 3 days. The cells were then fixed with 4% paraformaldehyde for 20 min. Cell apoptosis was detected by TUNEL staining using an in situ cell death detection POD kit (Roche, USA) according to the manufacturer’s instructions. TUNEL+ cells were counted in four non-overlapping fields per coverslip using a fluorescence microscope. The results were expressed as percentages of the total cell numbers.
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