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33 protocols using agilent eclipse xdb c18 column

1

Structural Elucidation of Organic Compounds

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Optical rotation spectra were recorded on a Modular polarimeter MCP 5100 (JASCO, Tokyo, Japan). ECD spectra and UV spectra were measured using a Biologic MOS450-SFM300 instrument (JASCO, Tokyo, Japan). The Spartan 14 program (Wavefunction Inc., Irvine, CA, USA) was used for calculating Merck molecular force field (MMFF). The Gaussian 16 program package1 was used for density functional theory (DFT) and time-dependent density functional theory (TDDFT) calculations. NMR spectra were recorded on a Bruker AV spectrometer (400 MHz for 1H NMR and 100 MHz for 13C NMR) (Bruker Corporation, Switzerland) instrument using DMSO-d6 as a solvent. Tetramethyl silane (TMS) was used as an internal standard. HRESIMS spectrometer were measured on a Q-TOF Ultima Global GAA076 LC mass spectrometer. (Billerica, MA, USA). Semi-Preparative HPLC was performed on an Agilent 1260 LC series with a DAD detector using an Agilent Eclipse XDBC18 column (9.4 250 mm, 5 µm) (Agilent Corporation, Santa Clara, CA, USA). Silica gel (Qing Dao Hai Yang Chemical Group Co.; 200–300 mesh) and octadecyl silyl silica gel (YMC; 12 nm–50 µm) were used for column chromatography (CC). Precoated silica gel plates (Yan Tai Zi Fu Chemical Group Co. (Yantai, China); G60, F-254) were used for thin-layer chromatography (TLC).
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2

Comprehensive Analytical Techniques for Chemical Characterization

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Optical rotations were measured with a JASCO P-1020 digital polarimeter (JASCO Corporation, Tokyo, Japan). UV spectra were recorded on a Beckman DU 640 spectrophotometer (Beckman Coulter, Inc., Miami, USA). IR spectra were recorded on a Nicolet Nexus 470 spectrophotometer (Thermo Fisher Scientific Inc., Massachusetts, USA) in KBr discs. HR-ESI-MS spectra were measured on a Micromass Q-TOF Ultima Global GAA076 LC mass spectrometer (waters corporation, Milford, USA). NMR spectra were recorded on Bruker 400 MHz spectrometers (Bruker Daltonics Inc., Karlsruhe, Germany) using TMS (Tetramethyl silane) as an internal standard δ. X-ray diffraction data were collected on an Agilent Technologies Gemini A Ultra system (Agilent Technologies Inc., Palo Alto, USA). Semipreparative HPLC was performed on an Agilent 1260 LC series with a DAD detector using an Agilent Eclipse XDB-C18 column (250 × 10.0mm, 5 µm). Silica gel (300-400 mesh, Qingdao Marine Chemical Inc., China), Silica gel (200-300) mesh (Qingdao Marine Chemical Inc., China), Silica gel H (10-40 μm, Qingdao Marine Chemical Inc., China), Lichroprep RP-18 gel (40-63 μm, Merck, Darmstadt, Germany), and Sephadex LH-20 (40-70 μm, Amersham Biosciences, Sweden) were used for column chromatography (CC).
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3

HPLC analysis of Furosemide samples

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All samples were analyzed using a Shimadzu LC-20AD HPLC system equipped with an SPD-M20A detector and LC solution software (Shimadzu Corporation, Kyoto, Japan). An Agilent Eclipse XDB C18 column (150 × 4.6 mm, 5 µm, Agilent Technologies, Santa Clara, CA, USA) was used for the analysis, and the column temperature was set at 35 °C. Furosemide samples were dissolved in a solvent mixture (acetonitrile/water/glacial acetic acid = 500:500:0.1, v/v/v). The buffer solution was prepared by dissolving 1.36 g of KH2PO4 in 1000 mL of water and the pH was adjusted to 3.0 with phosphoric acid. The mixture of buffer solution and methanol (90/10, v/v) was used as mobile phase A, and mobile phase B was a mixture of buffer solution and methanol (50/50, v/v). The LC gradient program was set as follows: time (min)/% B: 0/10, 10/63, 20/63, 30/100, 45/100, 55/10, and 60/10. The injection volume was 10 μL. The flow rate was 0.8 mL/min with a detection wavelength of 230 nm.
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4

Quantification of Lumefantrine by HPLC

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High-performance liquid chromatography (HPLC) was used to quantify LUM. The system consisted of an Agilent Technologies 1260 Infinity II HPLC with a diode array detector (DAD), Agilent Eclipse XDB-C18 analytical guard column (4.6 × 12.5 mm, 5 μm), and an Agilent Eclipse XDB-C18 column (4.6 × 150 mm, 5 μm) (Agilent, Mississauga, ON). The mobile phase consisted of an aqueous phase (0.1% formic acid in deionized water) and an organic phase (0.1% formic acid in acetonitrile) in a ratio of 70:30. Isocratic elution at a flow rate of 1 mL/min, and a detection wavelength of 310 nm were used to detect the drug.
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5

Preparative Scale Enzymatic Reactions

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A scaled up reaction of 1 in a total volume of 1 L was performed in 50 mM PBS buffer (pH 7.0) containing 100 μM 1, 10 mM NADH and 100 μM FAD at 30 °C for 2 h with occasional shaking. The reaction was quenched by the addition of an equal volume of ice-cold butanone and centrifuged at 2057 × g for 20 min at 4 °C. The reaction mixtures were then extracted with an equal volume of butanone three times and the solvents were removed under vacuum on an ice bath. The crude extracts were dissolved in 1.5 mL MeOH and subjected to semi-preparative HPLC using an Agilent Eclipse XDB-C18 column (250 mm × 9.4 mm, 5 μm; Agilent technology Ltd., USA) with an isocratic elution gradient of 70% A (H2O with 0.8% formic acid) and 30% B (MeCN) at a flow rate of 2.5 mL min−1. In this way, compounds 3 (8.5 mg, 22.0%), 7 (22.0 mg, 57.0%), 8 (6.0 mg, 15.5%), 9 (2.6 mg, 6.7%), 10 (1.6 mg, 4.1%) and 11 (3.4 mg, 8.8%) were obtained. Similarly, a 40 mL scale of reaction with 100 μM FST F (2) afforded 22 (2.0 mg, 15%), 23 (6.0 mg, 46.0%), 24 (0.9 mg, 7.0%), and 25 (1.2 mg, 9.0%). The 30 mL scale reactions of 16, 17 or 36 yielded 26 (1.3 mg, 44.0%), 27 (1.5 mg, 46.0%), or 38 (1.3 mg, 67.0%), respectively. A 30 mL scale reaction of 37 yielded 39 (1.8 mg, 11.0%), 40 (4.8 mg, 30.0%) and 41 (4.3 mg, 27.0%).
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6

Spectroscopic Characterization of Compounds

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UV spectra were detected on an Alltech UVIS-200 detector. IR spectra were determined on a Thermo Nicolet Nexus Is50 FT-IR spectrometer. The NMR spectra were acquired on a 400, 500, or 600 MHz Bruker FTNMR spectrometer. Chemical shifts are referenced to the solvent peaks at δH 2.50 and δC 39.52 for DMSO-d6. Mass spectra were obtained from a Bruker APEX IV 70 eV FT-MS spectrometer. The chromatographic (CC) substrates included silica gel (100−200 and 200−300 mesh) and HF254 silica gel for thin-layer chromatography (TLC) (Qingdao Marine Chemistry Co., Ltd., Qingdao, China). High-performance liquid chromatography (HPLC) was performed with an Alltech 426 pump equipped with an Alltech UVIS-200 detector (210 nm) and using a semipreparative reversed-phase column (YMC-packed, C18, 5 μM, 10 × 250 mm). UPLC was performed on an Agilent UPLC series 1200 (Agilent Technologies, Santa Clara, CA, USA) equipped with an Agilent Eclipse XDB-C18 column (5 μm, 4.6 × 150 mm). LC-MS analysis was carried out on an Agilent HPLC 1260 series system equipped with a Bruker microTOF QIII mass spectrometer by using an Agilent Eclipse XDB C18 column (5 μm, 4.6 × 150 mm) or Waters UPLC-MS system. The chemicals used in this study were obtained from Beijing Tongguang Fine Chemicals Company of the highest available purity.
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7

Comprehensive LC-HRMS Analysis of Crude Extracts

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High-resolution LC–MS (LC-HRMS) was carried out as described by Santiago et al.12 (link). Briefly, a concentration of 1 mg/ml of each crude extract (OPEM + mGb, OPEM + dGb and OPEM) was prepared. The samples were analyzed using the Agilent 1290 Infinity LC system coupled to the Agilent 6520 Accurate-Mass Q-TOF mass spectrometer (Agilent, California, USA) with electrospray ionization (ESI) interface in negative ion mode equipped with an Agilent Eclipse XDB-C18 column (150 mm × 2.1 mm column, Agilent, California, USA). The column conditions were as described by Santiago et al.12 (link). The mobile phase consisted of 0.1% formic acid in water and 0.1% formic acid in acetonitrile. The run time for the analysis was 25 min followed by a 5-min post-run time to minimize carry-over between injections. The collected data were processed using the Agilent MassHunter Qualitative Analysis B.07.00 (Agilent, California, USA). The secondary metabolites were identified by comparing with those recorded in the METLIN database. Three technical replicates were used in this study.
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8

Spectroscopic Analysis of Organic Compounds

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Optical rotations were measured on a JASCO P-1020 digital polarimeter (JASCO, Tokyo, Japan). Preparative HPLC were used for an Agilent 1260 prep-HPLC system with an Agilent Eclipse XDB-C18 column (9.4 × 250 mm, 7 µm, Agilent Corporation, Santa Clara, CA, USA). 1D and 2D NMR spectra were obtained on a Bruker AV-400 spectrometer (Bruker Corporation, Switzerland) (the temperature was 300 K, and the mix time of NOESY was 0.3 s) using TMS as an internal standard. The other experimental procedures were performed as reported previously [14 (link)].
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9

HPLC Analysis of PDB Extract

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HPLC to determine the representative components of PDB extract was performed using the LC-20A system (Shimadzu, Japan) with an Agilent Eclipse XDB-C18 column (4.6 × 250 mm, 5 μm) (Agilent Technologies, Inc., CA, USA). The mobile phase flow rate was set at 1 mL/min and the column temperature was 35 ± 1 °C. Standards (quercetin, kaempferol, and β-sitosterol) were obtained from the National Institute for Food and Drug Control (NIFDC). Detection was performed at a wavelength of 210 nm for β-sitosterol with methanol (A) and water (B) (A: B = 98:2) as the mobile phase, while that of quercetin and kaempferol was performed at 360 nm, with acetonitrile (C) and 0.2% phosphoric acid solution (D) (C: D = 15:85) as the mobile phase.
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10

Quantifying Vitamin E in Seeds

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Vitamin E (tocochromanols) in seeds were extracted and analyzed following the method as reported (Yang et al. 2011 (link)). Briefly, 200 μL of methanol:dichlromethane (9:1, v/v) were added into 5 mg of powdered dry seeds. The 5,7‐dimethyltocol (Matreya, www.matreya.com) was added as an internal standard. Samples were extracted in the dark for 30 min at room temperature. The mixtures were centrifuged and the organic phase was transferred to vials. Tocopherols and tocotrienols in the extracts were analyzed using an Agilent 1200 HPLC equipped with a fluorescence detector (excitation at 292 nm; emission at 330 nm). An Agilent Eclipse XDB‐C18 column (4.6 × 150 mm length; 5 μm particle size) was used to separate the individual vitamin E using a mobile phase of methanol:water (95:5, v/v) at a flow rate of 1.5 mL/min.
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