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4800 proteomics analyzer matrix

Manufactured by AB Sciex
Sourced in Spain

The 4800 Proteomics Analyzer is a matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry instrument designed for proteomics applications. It is capable of performing high-throughput protein identification and characterization.

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2 protocols using 4800 proteomics analyzer matrix

1

Muscle Protein Identification by Mass Spectrometry

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Aliquots of muscle homogenate (25 μg per sample) were solubilized in Laemmli sample buffer (BioRad Laboratories, Inc., CA, USA), denatured by boiling at 100°C for 5 min and separated by SDS-PAGE. Molecular weight standards (Precision Plus Protein All Blue Standards, BioRad) were also run on each gel to identify the proteins molecular weights. One-dimensional gels were stained by Coomassie Brilliant Blue R-250 (BioRad), and the stained gel images were semiquantitatively analyzed using the Image Studio Lite 3.1.4 software for Macintosh (LI-COR Biosciences, NE, USA).
Bands of interest were manually excised and sent for identification by peptide mass fingerprint to the Inbiotec S.L. (León, Spain) proteomics laboratory, where the samples were processed and analyzed with a 4800 Proteomics Analyzer matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF/TOF) mass spectrometer (ABSciex, MA, USA) according to the previously described methods of Oliván et al [25 ]. A database search on Mascot Generic Files combining MS and MS/MS spectra was performed using Mascot v 2.2 from Matrix Science through the Global Protein Server v 3.6 (ABSciex). When the Mascot score was greater than 85 points, the identified protein was considered a valid candidate.
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2

Protein Identification via MALDI-TOF/TOF Mass Spectrometry

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The identity of the overproduced protein was confirmed via peptide mass fingerprinting. The overproduced purified His6-SCO4439 protein was manually excised from a 1D Coomassie gel, and the proteins were digested following the method of Havlis et al.47 (link), and analyzed using a 4800 Proteomics Analyzer matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF/TOF) mass spectrometer (AB Sciex). Protein identification, was performed using Mascot v. 2.2.04.
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