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32 protocols using odn2216

1

Neutrophil-Derived Mitochondrial DNA Activation of Plasmacytoid Dendritic Cells

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Ox mtDNA was generated as previously described3 (link). Briefly, healthy neutrophils were pre-incubated with IFNα2β (2000 U/ml; Schering Corp.) for 90 min at 37 C and then extensively washed before incubation with anti-RNP IgG (50 μg/ml) purified from SLE patient sera. Neutrophil supernatants were then collected, centrifuged for 10 min at 1400g and stored at −80 C. PDCs (5×105 cells/well – 96 U bottom plate) were cultured with 40% v/v Ox mtDNA-containing neutrophil supernatants (referred in the text as “Ox mtDNA”) or with 5 μg/ml of either CpGA (ODN-2216; Invivogen) or CpGB (ODN-2006; Invivogen) for 24 h. The volume of Ox mtDNA-containing neutrophil supernatants and the concentration of CpGA were selected based on their capacity to trigger similar levels of IFNα production by pDCs.
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2

Diverse TLR Agonist Library Evaluation

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PAM2CSK4, PAM3CSK4, lipoteichoic acid (LTA), lipopolysaccharide (LPS) from E. coli 055:B4, MPLA, C12-iE-DAP, Murabutide, Poly (I:C) (high molecular weight), flagellin, CL307, ODN2216, ODN2006, and ODN2395 were purchased from InvivoGen (San Diego, CA). The TLR agonists DBS-2-217C,46 C4, IMDQ, Meta-amine,21 (link) EY-2-40,47 (link) XG-1-236,28 (link) MB-564, MB-569,37 (link) MB-152,34 (link) and KHP-3-12648 were synthesized using the routes previously described by us. C27449 was graciously provided by Dynavax Technologies (Berkeley, CA).
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3

Evaluating Innate Immune Responses

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To study innate immunity, 100 uL whole blood (1:1 in 10% autologous plasma containing RPMI-1640) is cultured for 24 hours at 37°C and 5% CO2 with TLR4 agonists MPLA (monophosphoryl lipid A, Invivogen)/LPS (Sigma) at 1.0 ug/mL and with TLR9 agonist ODN-2216 (Type A CpG oligonucleotide, Invivogen) at 1 uM. Optimum concentrations of these agonists for culture have been selected from our previous experiments and other studies [6 (link),38 (link),39 (link)]. After incubation, cell-free supernatants are collected and stored at -80° with 1% protease inhibitor for the analysis of TNF-α and IL-10 (MPLA/LPS culture) and IFN-α (CpG ODN culture) by ELISA kits.
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4

Isolation and Stimulation of Plasmacytoid Dendritic Cells

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Leukopacks were obtained from the Etablissement Français du Sang. Peripheral blood mononuclear cells (PBMCs) were recovered using density gradient centrifugation. The pDCs were isolated using magnetic beads on AutoMacs (Miltenyi Biotech) as previously described (Ka et al., 2014 (link)). Briefly, pDCs were isolated by depletion of non-pDCs that were retained in the column, while unlabeled pDCs with high purity (90%) were collected in the flow-through. Plasmacytoid dendritic cells were then suspended in RPMI 1640, supplemented with 20 mM HEPES, 10% fetal calf serum, 2 mM L-glutamine, 100 U penicillin/ml, 50 μg/ml streptomycin (Life Technologies), and 10 ng/ml recombinant IL-3 (R&D Systems), as described previously (Dental et al., 2012 (link)) and were stimulated with heat-inactivated (100°C for 30 min) C. burnetii organisms (bacterium-to-cell ratio of 50:1), or CpG-A 10 μg/mL (ODN 2216; InvivoGen) for 8 or 24 h.
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5

Isolation and stimulation of human monocytes

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Whole venous blood was collected into tubes containing 1.8 mg/ml K2EDTA (Becton Dickinson, Oxford, UK). PBMCs were isolated using Ficoll-plaque gradients (Cedarlane, Burlington, ON, Canada) as previously described [17 (link)]. Monocytes were isolated from PBMCs using CD14+ selection beads (Miltenyi Biotec, Bisley, UK) as per the manufacturer’s instructions before being cultured in RPMI1640 medium supplemented with 5% (v/v) fetal calf serum (PAN-Biotec, Aidenbach, Germany) and 1% (v/v) penicillin–streptomycin solution (PAA, Pasching, Austria). Cells were incubated with or without 100 ng/ml PAM3CSK4 (PAM3) or 10 ng/ml flagellin (Axxora, Exeter, UK), 1 ng/ml FSL-1, 10 ng/ml lipopolysaccharide (LPS), 2 μg/ml resiquimod (R-848), 2 μM ODN2006 or 2 μM ODN2216 (Invivogen, Toulouse, France) for 18 h at 37°C, 5% CO2. The concentrations of the TLR ligands were previously determined by titrating each ligand to determine the threshold for maximal activation.
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6

Modulation of NK cell activation

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Purified NK cells were cultured in RPMI-1640 (Invitrogen, Burlington, ON, Canada) supplemented with 10% FBS at a concentration of 1 × 106 cells/mL in 96-well round-bottomed plates for 20 h. NK cells were either unstimulated or stimulated by IL-15 (20 ng/mL; Miltenyi Biotec Inc., Auburn, CA, USA), IFN-α (1000 IU/mL; Merck, Kirkland, Quebec, Canada), or IL-2 (20 IU/mL; Novartis Pharmaceuticals Canada, Dorval, Quebec, Canada). For NK/pDC co-cultures, purified NK cells and pDCs were mixed at a ratio of 10:1 in the presence of CpG oligodeoxynucleotides (10 μg/mL; ODN 2216; InvivoGen, San Diego, CA, USA). For trans-well experiments, NK/pDC co-cultures were performed in 24-well plates using ThinCert inserts (Greiner Bio-One GmbH, Frickenhausen, Germany) with a 0.4-μm pore size. For type I IFN-blocking experiments in NK/pDC co-cultures, non-specific binding sites were blocked by adding 2 μg of mouse IgG2a, followed by the addition of mouse anti-human type I IFN-receptor chain 2 and anti-human IFN-α antibodies (20 μg/mL each; PBL Assay Science, Piscataway, NJ, USA).
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7

pDC Stimulation and Cytokine Assay

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Isolated spleen or BM pDCs (100k) were resuspended in 100 μL of complete 1640 medium and then stimulated in a 96-well U-bottom plate with 1-μM ODN2216 or 10-μg/mL poly U (Invivogen, San Diego, CA, USA) supplemented with Lipofectamine 2000 (ThermoFisher Scientific) (1.5 μL: 1000 μL) for 48 h. The supernatants were collected and stored at −80 °C for enzyme-linked immunosorbent assay (ELISA). Each group consisted of at least 3 mice, and each experiment was repeated at least 3 times.
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8

Measuring TLR Activation in HEK-Blue Cells

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HEK-Blue human TLR reporter cells were purchased from Invivogen (San Diego, CA). All reporter lines were cultured according to the manufacturer’s instructions. Briefly, cells were cultured in Dulbecco’s modified Eagle medium with 10% FBS, penicillin–streptomycin, and 100 μg/mL normocin. The selection antibiotics zeocin (100 μg/mL) and blasticidin (10–30 μg/mL) were added for two passages after the cells were thawed. Then, the cells were cultured for two additional passages before experimental use. For the reporter cell assay, cells were plated in 96-well flat-bottomed plates at 40 000–80 000 cells per well. NANPs were added, and cells were incubated at 37 °C for 24 h. Supernatants were collected and assayed using QUANTI-Blue (Invivogen, San Diego, CA) and recombinant SEAP as a standard. Specific TLR agonists were used as follows: 1 μg/mL poly(I:C) (TLR3), 5 μg/mL Imiquimod (TLR7), 5 μg/mL ssRNA40/LyoVec (TLR8), and 100 μg/mL ODN 2216 (TLR9) (all from Invivogen, San Diego, CA).
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9

Breast Cancer Cell Lines and ODN Stimulation

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The breast cancer cell lines, AU565 (MAM-A+/HLA-A2+) and MCF-7 (MAM-A/HLA-A2+), and human monocyte-like cell line, THP-1 cells, were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). Human CD8+T cells from HLA-A2+ healthy subjects were obtained from StemCell technologies (Cambridge, MA, USA). All cell cultures and incubations were performed as per provider’s recommendations and described by us before [19 (link),20 (link)]. Briefly, cells were cultured in RPMI-1640 medium at 37 °C in a 5% CO2 incubator until they were 80% confluent. The presence of MamA and HLA-A2 expression in the breast cancer cell lines was confirmed by western blot analysis (data not shown). The ODNs—ODN2216, ODN2006, and ODN M362 (respectively controls represented by suffix ‘c’)—were at vaccigrade and obtained from InvivoGen (San Diego, CA, USA). For ODN stimulation, the breast cancer cells and the THP-1 cells were cultured in 24 well plates, 1 × 105 per well pre-stimulated with PMA (phorbol myristate acetate, 10 ng/mL medium) for 16 h, washed once with RPMI-1640 media, and stimulated with ODNs (10 µM) for 5 h. These cells were later used for various experiments detailed below.
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10

Stimulation of Immune Cells with TLR Ligands

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Purified splenic B cells and BM-derived cDCs and pDCs isolated from individual mice were stimulated or not with mouse IFN-α11 (1000 U/ml, Miltenyi Biotec), the TLR7 ligand R848 (1 μg/ml, InvivoGen), the TLR9 ligand ODN-2216 (CpG, 1 μg/ml, InvivoGen), anti-IgM (20 μg/ml, eBioscience), or combinations thereof. At the indicated time-points, cells were harvested, counted, and analyzed by flow cytometry, while supernatants were assayed for cytokines by ELISA. In vivo TLR9 stimulation was induced by injecting mice i.v. with 2 μg CpG-A (ODN-2216) mixed with the cationic lipid DOTAP. Six hours later, serum was collected and tested for the presence of IFN-α by ELISA.
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