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Yo pro 1 iodide

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, Germany

YO-PRO-1 iodide is a fluorescent dye used for the detection and analysis of cells. It binds to nucleic acids and emits fluorescence upon binding, which can be measured using appropriate instrumentation.

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54 protocols using yo pro 1 iodide

1

Quantifying Neuronal Cell Viability

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Viability assays were modified from (20 (link)). Neurons were transfected with EBFP-2A-mCherry or EBFP-2A-H2B-EGFP, plated at a density of 10,000 cells/well, and grown in culture for one day before addition of HAT and HDAC inhibitors, as described above. At 2DIV, media was removed and replaced with 0.01 μM Yo-Pro-1-Iodide (Cat# C3099, Life Technologies, Waltham, MA) or 0.15 μM propidium iodide (Cat# P1304MP, Molecular Probes, Eugene, OR), both in PBS containing 1 μg/ml Hoechst 33342 (Cat#H1399, Molecular Probes, Eugene, OR ), and incubated at 37 °C for 30 minutes. Cellomics Cell Insight NXT (Thermo Scientific, Waltham, MA) acquired images for three channels: nuclear (Hoechst 33342), cell death stain (Yo-Pro-1-Iodide or propidium iodide), and reporter (EBFP-2A-mCherry or EBFP-2A-H2B-EGFP); compartmental analysis quantified intensities for each channel. Percent dead cells (Hoechst+/Yo-Pro-1-Iodide+ or Hoechst+/propidium iodide+) was quantified and subtracted from 100% to report number of live cells for greater than 1,000 cells. Values from 2-3 biological replicates was averaged and analyzed using graphpad prism.
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2

Yo-Pro-1 Fluorescence Assay for DNA Binding

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Yo-Pro-1 iodide binding assays were run similarly to previously published results,33 (link) where DNA and Yo-Pro-1 iodide (Thermo Fisher) were both diluted to a concentration of 1 μM (3.1 μg/mL plasmid) in either 25 mM NaAc, pH 5.0 or 150 mM PBS, pH 7.4 then mixed with polymer to give a 100 μL well volume in opaque black well plates. Green channel fluorescence was then measured using a plate reader after 30 minutes of incubation (Biotek Synergy 2). Gel electrophoresis binding experiments were run as previously described9 (link) with nanoparticles prepared in either 25 mM NaAc buffer, pH 5.0 or 150 mM PBS, pH 7.4, diluted with 30% glycerol for loading into a 1% agarose gel.
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3

Apoptosis Detection via YO-PRO-1 Fluorescence

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Cells were plated in 24-well plates and treated accordingly. YO-PRO-1 iodide (Molecular Probes-Life Technologies, Eugene, OR) is a nucleic acid dye that enters cells in early stages of apoptosis without interfering in cell viability (Glisic-Milosavljevic et al., 2005 (link); Idziorek et al., 1995 (link)). Apoptotic cells show green fluorescence. Cells were exposed to 1μM of YO-PRO-1 dye in phenol-red free medium and incubated for 20 minutes over ice. A Biotek synergy HT plate reader (Biotek, Winooski, VT) was used to measure fluorescence with EX 491nm and EM 509nm. Results were normalized to untreated 100%.
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4

Macrophage Infection and Laser-Induced Amastigote Extrusion

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Macrophages obtained from C57BL/6-GFP mice or transfected RAW 264.7 macrophages were infected with L. amazonensis-DsRed2 amastigotes for 24 to 96 h and cultivated in round dishes, suitable for the incubator coupled to the Leica SP5 II TS system. Using the Leica FRAP Wizard tool provided by the acquisition software, we delimited an area or a region of interest (ROI), in which laser pulses were applied. These ROI corresponded to Hoechst-stained macrophage nuclear regions, adjusting the focal plane (z axis) to the centre of the nuclei; a concentrated near-ultraviolet (UV) laser [405 nm, at 100% power (50 mW) and 400 Hz frequency] was applied to the ROI for 300–500 s before multidimensional live recordings (Soustelle et al., 2008 ). The technique was also employed to hasten the extrusion of amastigotes from RAW transfected cells, which are not suitable for long-term in vitro infection (i.e. for more than 5 days).
To check whether micro-irradiation is inducing apoptosis, micro-irradiation of 48 h infected BMDMØ cultures was performed in complete medium supplemented with 5% of L929 cell conditioned medium, 2.5 mM CaCl2, 500 nM of nuclear probe YO-PRO-1 Iodide (Molecular Probes) and 2.5 μg ml−1 of Annexin V-CF633 (Biotium).
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5

Apoptosis Assay with Garlic Compounds

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Cells were seeded at 1 × 104 cells for NIH3T3 and HUVEC and 2 × 104 for A549, MCF7, HT29 cells per well, in 100 µL complete medium, into 96-well plates and treated with garlic juice or allicin to obtain the final concentrations as indicated. The cells were incubated with allicin for 30 or 60 min, washed in PBS and subsequently incubated in the presence of 1 µM YO-PRO-1 iodide in 100 µL PBS (Molecular Probes, Eugene, OR, USA) for 20 min at room temperature. Fluorescence of YO-PRO-1 iodide is used as a measure for the relative quantity of apoptotic cells. Fluorescence was measured by spectrofluorimetry (VICTOR 2; PerkinElmer, Paris, France) at 490 nm excitation and 510 nm emission as described in [34 (link)].
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6

Measuring ATP-Induced Cell Signaling

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Cells were plated in black 96-well plates with clear bottom. When a confluence around 80–90 % was reached, the media was changed to a physiological buffer (140 mM NaCl, 10 mM HEPES, 1 mM MgCl2, 0.4 mM KH2PO4, 1.6 mM K2HPO4, 1.5 mM CaCl2) with 11.1 mM of glucose for AsPc-1 and BxPC-3 and 25 mM for Panc-1. Cells were incubated with AZ10606120 (10 μM) or A438079 (10 μM) for 1 h. Then cells were incubated with Yo-Pro-1 Iodide (2.5 μM, Molecular Probes) for 15 min. ATP was dissolved in a physiological buffer and the indicated concentrations were added. Ionomycin (5 μM) was added at the end of each experiment. Fluorescence was read every 10 min by FLUOstar OPTIMA.
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7

Neuronal Cell Culture Preparation

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Poly‐d‐Lysine (PDL) (P0899), DNase 1 type IV, Triton X‐100, FITC‐NHS, Rhodamine 6G (Rh6G), fluorescein sodium salt (FITC), and 1,1′‐Dioctadecyl‐3,3,3′,3′‐tetramethylindocarbocyanine perchlorate were purchased from Sigma‐Aldrich. Alexa‐Fluor 488 goat anti‐mouse, 4′,6‐diamidino‐2‐phenylindole, paraformaldehyde (PFA, 7 230 681), goat serum, Dulbecco's modified eagle medium (DMEM), penicillin/streptomycin (Pen/Strep), B27 supplement (17 504 001), GlutaMAX, neurobasal medium, Fluoromount‐GTM mounting medium (00‐4958‐02), fetal bovine serum (FBS), CMFDA, and YO‐PRO‐1 iodide were purchased from Life Technologies. Mouse anti‐Tuj1 antibody (801 202) was purchased from Biolegend. Rabbit anti‐GFAP (Z0334) was obtained from DAKO. Papain suspension was purchased from Worthington. Cell strainer (70 µm) was obtained from BD, Biosciences, USA.
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8

Monitoring BzATP-Induced YO-PRO-1 Uptake in PBMCs and Splenocytes

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106 human PBMCs were stained with the appropriate antibodies, washed, resuspended in RPMI 1640 complete medium, and loaded with YO-PRO-1 iodide (Life Technologies) at a final concentration of 5 µM. The YO-PRO-1 uptake following cell stimulation with 1 mM BzATP (Sigma) was monitored on an LSRFortessa for 480 s, and the kinetics was analyzed using FlowJo software (TreeStar). Murine splenocytes (106) were stimulated with 0.1 mM BzATP.
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9

Granulosa Cell Culture Protocols

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All cell culture materials were obtained from Gibco Inc. Recombinant Human Activin-A (GFH6) was purchased from Cell Guidance Systems. RepSox (#72392), a cell permeable, selective inhibitor of the TGF-β type 1 receptor (TGFβRI) ALK5 was obtained from Stemcell Technologies. Recombinant forms of FSH (Gonal-F) and hCG (Ovitrelle) was purchased from Merck Global (Darmstadt, Germany). SAPK/JNK Kinase Assay Kit (#8794, nonradioactive), Hoechst 33342 (#4082), anti c-Jun (#9165), anti-phospho-c-JunSer73 (#3270S), Anti-Phospho-SAPK/JNKThr183/Tyr185 (#9251), Smad2 (#3122) and Phospho-Smad2Ser465/Ser467 (#18338) antibodies were obtained from Cell Signaling. Oil Red O was purchased from Sigma Inc. (USA). All western blotting buffers and reagents were purchased from Bio-Rad. Anti-Vinculin Antibody (V9264) was purchased from Sigma-Aldrich. Mouse antihuman monoclonal antibodies were purchased from Santa Cruz Biotechnology for the detection of human 3β-HSD Type II (sc-100466), 17β-HSD type-I (sc-376719), StAR (sc-166821), and P450 SCC (CYP11A1, sc-292456). Aromatase (CYP19A1, ab34193) monoclonal mouse antibody was from Abcam Inc. YO-PRO®-1 Iodide (491/509) was obtained from Life Technologies. Texas Red™-X Phalloidin was obtained from Thermo Fisher Scientific.
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10

YOPRO-1 Dye Uptake Assay

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For YOPRO-1 dye uptake experiments cells were plated at a density of 2 × 104 cells/well in complete RPMI 1640 media (100 µL per well) in poly-D-lysine coated 96-well plates. Media was removed using a manual multichannel pipette and replaced with a low divalent cation buffer (145 mM NaCl, 2 mM KCl, 13 mM D-glucose, 10 mM HEPES and 0.1 mM CaCl2, pH 7.3) containing 2 µM YO-PRO-1 iodide (Life Technologies catalogue number Y3663). For most experiments, ginsenosides (10 µM) were co-injected simultaneously with the agonist using a Flexstation 3 microplate reader (Molecular Devices, UK). Ginsenosides and agonist were prepared at 10X final concentration in the compound plate. Dye uptake over time was recorded using an excitation wavelength of 488 nm and an emission wavelength of 520 nm on the Flexstation 3 (6 reads/well, PMT setting medium). Basal fluorescence measurements were acquired for 40 sec followed by automatic injection of agonist and the kinetic measurement of fluorescence intensity was performed for 300 sec using Softmax Pro v5.4 software (Molecular Devices). Measurements were performed in triplicate and repeated in three independent experiments. Dye uptake responses were calculated as area under the curve from 50–300 sec using zero baseline normalised data.
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