The ABI-7900 HT real-time thermal cycler is a laboratory instrument designed for performing real-time polymerase chain reaction (PCR) experiments. It is capable of precisely controlling temperature and monitoring fluorescent signals during the amplification of DNA or RNA samples. The ABI-7900 HT provides researchers with a reliable platform for quantitative gene expression analysis, genotyping, and other real-time PCR applications.
All buffy-coat cryotubes were stored in freezers at −80°C. Genomic DNA was extracted from peripheral white blood cells using the QG-Mini80 workflow with DB-S kit (Fujifilm Corporation, Tokyo, Japan) as instructed. Telomere length ratio (T/S ration) was measured using a quantitative PCR-based technique [19 (link)]. In this method, the ratio of the telomere repeat copy number (T) and single-copy gene number (S) was compared for each sample. Reactions for DNA samples were run in 7 μL reaction volumes with ABI-7900 HT real-time thermal cycler (Applied Biosystems). The primers are as follows.
Cycling conditions of telomere were as follows: 95°C incubation for 10 minutes followed by 35 cycles of 95°C for 15 seconds and 56°C for 1 min. As for the cycling conditions of β-globin, 95°C incubation for 10 minutes followed by 40 cycles of 95°C for 15 sec and 56°C for 1 min. The specificity of all of the amplification was determined by melting curve analysis.
Liu Z., Zhang J., Yan J., Wang Y, & Li Y. (2014). Leucocyte Telomere Shortening in relation to Newly Diagnosed Type 2 Diabetic Patients with Depression. Oxidative Medicine and Cellular Longevity, 2014, 673959.
RNA was isolated using the Qiagen RNeasy Micro Kit according to the manufacturer's instructions. cDNA was generated using Random Hexamers (Fermentas), M-MuLV Reverse Transcriptase and Ribolock RNAse inhibitor (Fermentas). Quantitative PCR reactions were carried out using a SYBR supermix (BIORAD) using an ABI 7900HT real time thermal cycler (Applied Biosystems) and primers for genes of interest (see Table S1 for qPCR primer information). Q-PCR primers were designed in PRIMER EXPRESS 2.0. qPCRs were performed in triplicate in a minimum of three independent experiments. HMBS was used as an internal standard to calculate relative gene expression levels with the 2 -ΔΔC T method (Livak and Schmittgen, 2001) .
Schaafsma W., Basterra L.B., Jacobs S., Brouwer N., Meerlo P., Schaafsma A., Boddeke E.W.G.M, & Eggen B.J.L. (2017). Maternal inflammation induces immune activation of fetal microglia and leads to disrupted microglia immune responses, behavior, and learning performance in adulthood. Neurobiology of disease, 106.
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