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3 protocols using mouse anti flag clone m2 f1804

1

Fluorescent Protein Overexpression in Engineered MEFs

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HA-tagged GFP (pcDNA3.1-3XHA-GFP plasmid; Brady et al., 2011 (link)) and FLAG (DYKDDDDK)-tagged hRhoD ORF clone (pcDNA3.1+C-(K)-DYK, ABIN4924331, Genomics-Online.com) overexpression constructs were transfected into sgp53(2) E1A;HrasG12V;H11Cas9 MEFs using Lipofectamine 2000 (Invitrogen), as described above. After 24 h, cells were harvested, fixed, permeabilized, and stained with Alexa Fluor 647 Phalloidin (A22287; Thermo Fisher Scientific, 1:1,000) to mark F-actin, mouse anti-FLAG (clone M2 F1804; Sigma-Aldrich, 1:50), mouse anti-HA (12CA5; Sigma-Aldrich, 1:50), fluorescein goat anti-rabbit IgG (FI-1000; Invitrogen, 1:250), and fluorescein anti-mouse IgG (FI-2000; Invitrogen, 1:250). Cells were visualized using a Leica DMi8 inverted microscope with a 63×/1.4 oil-immersion objective. Z-stack images were captured and processed using a Leica DFC9000 GT digital camera, LASX acquisition software, and 3D-deconvolution and maximum-projection algorithms.
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2

Polyclonal Anti-SART3 Antibody Characterization

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Polyclonal, affinity purified anti-SART3 was generated by SDIX (Newark, DE, USA) using DNA immunization of rabbits against a polypeptide (amino acids 1–163). Antibodies were used at the following dilutions: rabbit anti-C. elegans SART3 (Q5635) 1:2000, mouse anti-Actin (clone C4, MAB1501, Millipore, Billerica, MA, USA) 1:10 000, mouse anti-GFP (mixture of clones 7.1 and 13.1, Roche, Penzberg, Germany) 1:2000, mouse anti-FLAG (clone M2, F1804, Sigma–Aldrich, St Louis, MO, USA) 1:2000. Western blotting was performed as previously described (38 (link)). Band intensities were quantified using ImageJ software (NIH, Bethesda, MD, USA).
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3

Autophagy Evaluation in Cell Lines

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Rabbit anti-LC3 (L8918), mouse anti-alpha-tubulin (T6199) and mouse anti-FLAG® clone M2 (F1804) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Rabbit anti-SQSTM1/p62 (PA5-20839) was from ThermoFisher Scientific (Waltham, MA, USA). Rabbit anti-procaspase-3 (#9665), rabbit anti-cleaved-caspase-3 (Asp-175, clone 5A1E) (#9664), mouse anti-procaspase-9 (#9508), rabbit anti-PARP (#9542), rabbit anti-cleaved-PARP (#5625), rabbit anti-Atg5 (#12964) were from Cell Signaling (Danvers, MA, USA). Mouse anti-cytochrome c (7H8) (sc-13560) was from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Mouse anti-GFP (Ab1218) was from Abcam (Cambridge, UK). Rabbit and mouse horseradish-peroxidase-conjugated secondary antibody were from Cell Signaling. FITC-conjugated secondary antibody Alexa Fluor 488, MitoTracker Orange CMTM Ros (mitochondrial selective dye) (M7510) and the LysoTracker Green DND-26 (lysosomal selective dye) (L7526) were acquired from Molecular Probes (ThermoFisher Scientific). Trehalose (T0167), rapamycin (R0395), chloroquine (CQ) (C6628), ammonium chloride (NH4Cl) and docetaxel were purchased from Sigma-Aldrich. 3-MA (S2767) was obtained from Selleckchem (Munich, Germany).
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