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Scrambled rna scrna

Manufactured by GenePharma
Sourced in China

Scrambled RNA (scRNA) is a laboratory tool used to analyze the expression patterns of individual cells. It enables the identification and quantification of RNA transcripts within a single cell, providing insights into gene expression profiles. The core function of scRNA is to facilitate high-throughput, single-cell RNA sequencing and analysis.

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3 protocols using scrambled rna scrna

1

Generating FOXM1-V5 and ABCG2 Promoter Constructs

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pcDNA6-V5-His was purchased from Invitrogen. pFOXM1 was provided by Dr. Ju-Seog Lee (MD Anderson Cancer Center). To generate the pFOXM1-V5 tag, the coding sequence (CDS) region was amplified by PCR from pFOXM1 DNA. pGL3 basic plasmid was purchased from Promega. To generate the pGL3 basic-ABCG2 promoter, its region from −2105 to +22 was cloned by PCR from human genomic DNA using the indicated primer sets (Table S1). Scrambled RNA (scRNA) was purchased from Shanghai GenePharma (Shanghai GenePharma). siFOXM1 was synthesized from ST Pharm Oligo center (ST Pharm). Transfection was carried out according to the manufacturer’s protocol (Jetprime).
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2

Transfection of Cell Lines with FOXM1

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All cells were transfected using jetPRIME reagent (Cat. 114-15, Polyplus Transfection, Inc., NY, USA) at a ratio of DNA to reagent of 1:3 according to the manufacturer’s protocol. In our previous study, the pcDNA6-V5-His-tag expression vector was purchased from Invitrogen (Cat. V22020, Carlsbad, CA) and pFOXM1 was provided by Dr. Ju-Seog Lee (MD Anderson Cancer Centre, TX, USA) [32 (link)]. Scrambled RNA (scRNA) was purchased from GenePharma (Shanghai Co., Ltd., China), and siFOXM1 was synthesized at the ST Pharm Oligo center (ST Pharm, Seoul, Korea).
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3

FANCD2 Promoter Cloning and Knockdown

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pGL3-Basic and pRL-Renilla luciferase reporter plasmids were purchased from Promega (WI, USA). To generate the pGL3 Basic-FANCD2 promoter (from −3347 to –1), human genomic DNA was amplified by PCR using the indicated primer sets (Table S2). We purchased shRNA for FOXM1 from Sigma. The plasmids that stably expressed a shRNA against FOXM1 (shFOXM1) were established in a pLKO.1-TRC cloning vector (Addgene, MA, USA). We used a pLKO.1-puro nontarget shRNA plasmid (Sigma) for the negative control. pMD2.G and psPAX2 plasmids were purchased from Addgene (MA, USA). To construct pFANCD2 (FANCD2 overexpression vector), the coding sequence (CDS) of FANCD2 was inserted into the NheI/XhoI restriction enzyme sites of a pcDNATM6/V5-His A plasmid (Invitrogen, MA, USA). All constructs were verified using a DNA sequencing.
Scrambled RNA (scRNA) was purchased from Shanghai GenePharma (Shanghai, China). siFOXM1 (5’-GGACCACUUUCCCUACUUU-3’) was synthesized by the ST Pham Oligo Center (Korea). Plasmid and siRNA transfection were conducted using jetPRIME reagent (Polyplus, NY, USA) according to the manufacturer’s protocol.
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