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8 protocols using pmscv ires mcherry

1

Diverse Plasmid Constructs for Cellular Studies

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pCMV6-UCK2-GFP (Origene #RG202406)
pCMV6-UCK2-Myc-DDK (Origene #RC202406)
pCMV6-UCK1-Myc-DDK (Origine #RC220876)
UCK1-GFP (UCK1 ORF cloned into pCMV6-GFP vector through restrictions sites Xho1 and SacII)
pCMV6-UPRT-Myc-DDK (Origene #RC205030)
pLJC2-UPMS-3xFLAG (a gift from David Sabatini, Addgene plasmid # 87975) http://n2t.net/addgene:87975 ; RRID:Addgene_87975)
pcDNA3.3-mini-INT-HA-TgUPRT (a gift from Mike Cleary Lab)
pMSCV-IRES-mCherry (a gift from Ellen Rothenberg, Addgene plasmid # 80139) http://n2t.net/addgene:80139 ; RRID:Addgene_80139)
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2

Diverse Plasmid Constructs for Cellular Studies

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pCMV6-UCK2-GFP (Origene #RG202406)
pCMV6-UCK2-Myc-DDK (Origene #RC202406)
pCMV6-UCK1-Myc-DDK (Origine #RC220876)
UCK1-GFP (UCK1 ORF cloned into pCMV6-GFP vector through restrictions sites Xho1 and SacII)
pCMV6-UPRT-Myc-DDK (Origene #RC205030)
pLJC2-UPMS-3xFLAG (a gift from David Sabatini, Addgene plasmid # 87975) http://n2t.net/addgene:87975 ; RRID:Addgene_87975)
pcDNA3.3-mini-INT-HA-TgUPRT (a gift from Mike Cleary Lab)
pMSCV-IRES-mCherry (a gift from Ellen Rothenberg, Addgene plasmid # 80139) http://n2t.net/addgene:80139 ; RRID:Addgene_80139)
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3

Plasmid Transfection for Neural Expression

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Injected plasmids were: pCAG-IRES-GFP (0,75 µg/µl) and pCAG-hKir2.1-IRES-GFP (2 µg/µl) (gift from Guillermina Lopez-Bendito); pCAG-IRES-mCherry (1,25 µg/µl; subcloned from pMSCV-IRES-mCherry, Addgene #52114); pCAG-ChR2-Venus (Addgene #15753); pNeuroD-IRES-GFP and pNeuroD-hKir2.1-ires-GFP (2 µg/µl; subcloned from pNeuroD-CRE-IRES-GFP, gift from Dayer lab); pCAG-hM4D-IRES-GFP (2 µg/µl; subcloned from pcDNA5-HA-hM4D, Addgene #45548); pGR-hM3D-pGK-GFP (2µg/µl; Addgene #45547); pGR-IRES-tdTOM (0,75 µg/µl; gift from Alexandre Dayer); pGR-hKir2.1-HA (2 µg/µl); pGR-M38-TOPdGFP (2 µg/µl, Addgene #17114); pGR-dnTCF4-pGK-GFP (2 µg/µl); pGR-∆45-βcatenin-pGK-GFP (2 µg/µl), pCWX-pTF-dnTCF4-pGK-GFP-E2A-rtTA (2 µg/µl).
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4

Dino Overexpression Lentivirus Generation

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Full-length mouse Dino was PCR amplified (Phusion HF PCR Master Mix, NEB) using Fwd-BamHI and Rev-NotI encoding primers, and ligated into the multiple cloning site of pCDH-EF1α-MCS-(PGK-GFP-T2A-Puro) (System Biosciences CD813A-1). Empty vector was used to generate control copGFP positive virus, pMSCV-IRES-mCherry (Addgene plasmid # 52114) was used to make control mCherry positive virus. pBabe 12S E1A was a gift from Scott Lowe (Addgene plasmid # 18742). pWZL hygro H-Ras V12 was a gift from Scott Lowe (Addgene plasmid # 18749). Fuw-dCas9-Tet1CD-P2A-BFP (Addgene plasmid 108245), Fuw-dCas9-dead Tet1CD-P2A-BFP (Addgene plasmid # 108246) and pgRNA-modified (Addgene plasmid #84477) were a gift from Rudolf Jaenisch. All plasmids were propagated in single shot Mach I bacteria (Life Technologies), and Sanger sequenced prior to use. Lentiviral vectors were transfected into LentiX 293T cells (Takara) using Lenti-X Packaging Single Shots (Takara). Supernatants were filtered (0.45μM) and concentrated using Lenti-X concentrator (Takara) prior to use. Retroviral vectors were transfected into Pheonix-293T packaging cells using Calphos Mammalian Transfection Kit (Clontech).
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5

Cloning TET3 and RUNX3 Expression Plasmids

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To construct the TET3-mCherry and Runx3-blue expression plasmids, the open reading frames of TET3 and RUNX3 were amplified by PCR using the primers listed in Supp. Table 1. The PCR products were cloned into the pMSCV-IRES-GFP (86537, addgene, Cambridge, MA) pMSCV-IRES-mCherry (80139, addgene) and pMSCV-IRES-Blue FP (52115, addgene) vectors using the NEBuilder HiFi DNA Assembly Kit (New England Biolabs, Ipswich, MA).
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6

Dino Overexpression Lentivirus Generation

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Full-length mouse Dino was PCR amplified (Phusion HF PCR Master Mix, NEB) using Fwd-BamHI and Rev-NotI encoding primers, and ligated into the multiple cloning site of pCDH-EF1α-MCS-(PGK-GFP-T2A-Puro) (System Biosciences CD813A-1). Empty vector was used to generate control copGFP positive virus, pMSCV-IRES-mCherry (Addgene plasmid # 52114) was used to make control mCherry positive virus. pBabe 12S E1A was a gift from Scott Lowe (Addgene plasmid # 18742). pWZL hygro H-Ras V12 was a gift from Scott Lowe (Addgene plasmid # 18749). Fuw-dCas9-Tet1CD-P2A-BFP (Addgene plasmid 108245), Fuw-dCas9-dead Tet1CD-P2A-BFP (Addgene plasmid # 108246) and pgRNA-modified (Addgene plasmid #84477) were a gift from Rudolf Jaenisch. All plasmids were propagated in single shot Mach I bacteria (Life Technologies), and Sanger sequenced prior to use. Lentiviral vectors were transfected into LentiX 293T cells (Takara) using Lenti-X Packaging Single Shots (Takara). Supernatants were filtered (0.45μM) and concentrated using Lenti-X concentrator (Takara) prior to use. Retroviral vectors were transfected into Pheonix-293T packaging cells using Calphos Mammalian Transfection Kit (Clontech).
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7

Retroviral Transduction of Murine CD4 T Cells

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Cxcr6 expressing plasmid was generated by cloning Cxcr6 gene block amplified from ORF (GenScript) into MSCV-IRES-GFP backbone (Addgene # 20672). Retrovirus was produced by co-transfecting Phoenix-ECO (American Type Culture Collection CRL-3214) with transfer plasmid, MSCV-Cxcr6-IRES-GFP or pMSCV-IRES-mCherry (Addgene # 52114) and pCL-Eco (Addgene #12371) using TransIT-293 transfection reagent (Mirus Bio Cat. 2705). Media was changed 16 hours post-transfection. Retrovirus was collected in the two following days and supernatant was stored at −80C for transduction. Primary murine CD4 T cells were stimulated overnight with platebound anti-CD3/anti-CD28 beads before transduction. Transduction was performed on Days 1 and 2 by spinoculation at 2000 x g for 90 minutes at 32°C using low acceleration and minimal deceleration. Transduced cells were incubated for 4 days with platebound anti-CD3/anti-CD28 in media supplemented with hIL-2 (0.0344 units/mL, Peprotech #200–02). Transduction efficiency was assessed for each experiment by flow cytometry.
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8

Cloning NK Cell Cytokine Genes

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NK cells were isolated from spleen of C57BL/6 WT mice and NK cell mRNA was purified using RNeasy Mini Kit (QIAGEN). Total cDNA was prepared by reverse transcription and DNA was then amplified using the following primers: XCL1-Forward (BamHI) 5′-GGCCCGGGGATCCATGGATGAGACTTCTCCTCCT-3′ and XCL1-Reverse (XhoI) 5′-CGGCCAACCGGCTCGAGTTACCCAGTCAGGGTTA-3′ for XCL1; CCL5-Forward (BamHI) 5′-GGCCCGGGGATCCATGGATGAAGATCTCTGCAG-3′ and CCL5-Reverse (XhoI) 5′-CGGCCAACCGGCTCGAGCTAGCTCATCTCCAAATA-3′ for CCL5. Both PCR products and the target vector pMSCV-IRES-mCherry (Addgene #52114) were then digested with XhoI and BamHI for 1h at 37°C and purified by gel extraction after agarose gel electrophoresis. Ligation was performed for 1h at room temperature using T4 DNA ligase (NEB). The ligation mix was then transformed into One Shot TOP10 chemically competent bacteria (Thermo Fischer Scientific) and plated on ampicillin containing LB-agar plates. Single colonies were then sequenced and used for plasmid isolation using the High speed Maxi Kit (QIAGEN).
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