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18 protocols using ab219413

1

Protein Expression Analysis of Monocytes

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Isolated Monocytes were lysed with RIPA lysis buffer (Beyotime Biotechnology, P0013B) containing protease inhibitors (Roche, 04693132001) and phosphatase inhibitors (Roche, 04906845001), and lysed on ice for 30 minutes. The lysate was clarified by centrifugation at 15000 g at 4°C for 15 minutes. Protein concentration was measured by the bicinchoninic acid assay (Beyotime Biotechnology, P0009). Separate equal amounts of protein from all samples by SDS-PAGE and transfer to PVDF membrane (Merck Millipore, ISEQ00010). The membranes were blocked with 5% (w/v) non-fat milk in PBS containing 0.1%(v/v) Tween-20 for 1 hour and incubated at 4°C overnight with primary antibodies, CD14 (1:1000; Abcam; ab221678), MyD88 (1:800; Abcam; ab219413), p65-NFκB (1:1000; Abcam; ab32536), p65-NFκB phospho S536 (1:1000; Abcam; ab76302), GAPDH (1:5000; Sigma-aldrich; G9545). Immunoreactive bands were detected by horseradish peroxidase–labeled secondary antibodies using SuperSignal™ West Pico Plus (ThermoFisher Scientific, 34577). Prestained protein ladders were used to estimate the molecular weights (ThermoFisher Scientific, 26616). Merge image and images of each protein hybridization membrane is shown in Supplementary Figure 3. Protein band intensity was measured using Image J software.
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2

Intestinal Tight Junction Protein Analysis

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The total proteins of intestinal tissues were extracted by RIPA protein lysis buffer (Invitrogen; USA), and the concentration and purity of proteins were measured by a BCA protein kit (Pierce; USA). Then, 40 μg of protein from each sample was separated by SDS–PAGE, transferred to PVDF membranes by the electric transfer method and blocked with skim milk at room temperature for 1 h. After incubation with primary and secondary antibodies, the protein bands were visualized by enhanced chemiluminescence (Pierce; USA). The primary antibodies were diluted at 1:1000 as follows: anti-ZO-1 (ab96587; Abcam; UK), anti-Occludin (ab216327; Abcam; UK), anti-TLR2 (ab213676; Abcam; UK), anti-Tollip (ab187198; Abcam; UK), anti-MyD88 (ab219413; Abcam; UK), anti-IRAK1 (ab238; Abcam; UK), anti-p-IRAK1 (ab218130; Abcam; UK), anti-p65 (ab16502; Abcam; UK), anti-p-p65 (ab76302; Abcam; UK), anti-MLCK (ab232949; Abcam; UK), and anti-GAPDH (ab8245; Abcam; UK). The grayscale value analysis was performed by using ImageJ software (version 1.52a; National Institutes of Health), and GAPDH was used as the loading control.
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3

Western Blot Analysis of Inflammatory Signaling Proteins

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The experimental procedures were performed as previously reported [2 (link)]. The extraction of total protein was performed on ice throughout the entire process. The protein concentration was determined by Bradford method. Total proteins were separated on a 10% SDS-PAGE gel, then transferred onto PVDF membranes (Bio-Rad Laboratories Inc., CA, USA). After blocked with 5% non-fat milk for 1 h, membranes were incubated with antibodies RIP3 (ab62344, Abcam, Cambridge, UK), MLKL (ab184718, Abcam), MyD88 (ab219413, Abcam), TLR4 (ab13556, Abcam), p-IκB (CY6280, Abways Technology Inc., Shanghai, China), IκB (CY2327, Abways) and p65 (ab32536, Abcam). β-actin (AB0011, Abways) or histone H3 (ab1791, Abcam) was used as the loading control. Then, membranes were incubated with Peroxidase AffiniPure Goat Anti-Rabbit IgG (H + L) (111-035-003, 1:10,000, Jackson ImmunoResearch Inc., PA, USA) for 1 h and then HRP chemiluminescence detection reagent (Tiangen Biotech, Beijing, China). Tanon 5200 automatic chemiluminescence image analysis system (Tanon, Beijing, China) was applied for ECL imaging. Image J software (Rawak Software Inc., Stuttgart, Germany) performed semi-quantitative analysis.
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4

Western Blot Analysis of Inflammatory Signaling

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Cells were rinsed in PBS and scraped in 400 ml of cell lysis buffer containing protease and phosphatase inhibitor cocktails (Roche, Mannheim, Germany). Cell lysates were then centrifuged at 12,000 rpm for 15 min at 4°C. The protein concentration in each lysate was then determined using the BCA assay. SDS-PAGE gels were loaded with the same amount of protein, and the NC membrane was blocked for 30 min with skimmed milk. Several primary antibodies were used for western blotting (as 1:1000 dilutions): NF-κB p65, ab16502; IkBα, ab76429; TLR2, ab108998; MyD88, ab219413; IRAK1, ab238; TRAF6, ab33915; TIRAP, ab17218; TAK1, ab109526; p-NF-κB p65, ab76302; IRAK4, 4363; p-PI3K, ab182651 (Abcam, Cambridge, MA, United States). We also used β-actin, 4970, GAPDH, 5174; AKT, 9272; and p-AKT, 4060S (Cell Signaling Technology, United States). HRP-labeled goat anti-rabbit secondary antibodies were used at a dilution of 1:2000 (A0208; Beyotime Biotechnology, Shanghai, China) and immunoreactive bands were detected using an Amersham Imager 600 (GE Healthcare Bio-Sciences AB, Uppsala, Sweden).
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5

Western Blotting for TLR4 and NF-κB Signaling

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Cell or tissue proteins were extracted using RIPA solution (P0013C, Beyotime, Shanghai, China) containing protease inhibitors (CW2200S, CWBIO, Beijing, China). After extraction and denaturation of total proteins, 10% gel electrophoresis was used to separate the proteins, and activated PVDF membranes were used for transfer. Subsequently, the blocked-membranes with 5% skim milk powder were incubated with primary antibodies such like anti-TLR4 (1:1000, 14358S, CST, Boston, MA, USA), anti-MyD88 (1:1000, ab219413, Abcam, Cambridge, UK), anti- TIR domain containing adaptor molecule 1 (TRIF) (1:3000, ab13810, Abcam, Cambridge, UK), anti-NF-κB (1:3000, 8242T, CST, Danvers, MA, USA), anti-IκBα (1:3000, 4814T, CST, Danvers, MA, USA), Anti-ATP citrate lyase antibody (ACLY) (1:10000, ab40793, Abcam, Cambridge, UK), phospho- ACLY (1:1000, 4331T, CST, Danvers, MA, USA), and anti- β-actin (1:20000, 81115-1-RR, Proteintech, Chicago, IL, USA) followed by corresponding secondary antibodies (1:6000, 7074/7076, CST, Danvers, MA, USA) at 25 °C for 2 h. The membrane was incubated with ECL reagents (610020-9Q, Qing Xiang, Shanghai, China) and visualized by ImageJ software.
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6

Protein Expression Analysis in Mouse Tissues

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Total protein was extracted from mice’s heart and colon tissues using radio-immunoprecipitation assay (RIPA) lysis buffer, and protein concentrations of the extracts were assessed by BCA assay. Western blotting was performed using the following antibodies: TLR4 (1:800, Abcam, ab- 13556), MyD88 (1:1000, Abcam, ab-219413), NF-κB p65 (1:10,000, Abcam, ab-32536), NF-κB p65 (phospho-T254) (1;800, Abcam, ab-131100), occludin (1:1000, Abcam, ab-216327), GAPDH (1:1000, Abcam, ab-32536), and β-actin (1: 500, Abcam, ab-115777). Band intensities were quantified using Image Pro Plus 6.0.
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7

Protein Expression Analysis of TLR4 Signaling Pathway

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Lung samples were homogenized and qualified with a BCA detecting kit (Beyotime, China). Protein lysates of 30 μg were separated by SDS‐PAGE and transferred onto the PVDF membrane (Millipore, USA). After being blocked with 5% (w/v) nonfat milk, the membranes were then incubated with primary antibodies against TLR4 (1:500, ab13556, Abcam), MyD88 (1:1000, ab219413, Abcam), NF‐κB p65 (1:2000, ab32536, Abcam), Bax (1:1000, ab182734, Abcam), Bcl‐2 (1:2000, ab182858, Abcam), and β‐actin (1:5000, D191047, Sangon Biotech, China) at 4°C overnight. Next, the membranes were incubated with HRP‐conjugated goat anti‐rabbit secondary antibody (1:2000, ab7090, Abcam) for 1 h at room temperature. Finally, the optical density of bands was measured via ImageJ software.
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8

Protein Expression Analysis in Cardiac Cells

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Total proteins were extracted from HL1 cells or mouse myocardial tissues using RIPA lysis buffer (Beyotime Institute of Biotechnology) supplemented with protease and phosphatase inhibitors (Beyotime Institute of Biotechnology). Protein concentrations were determined using the BCA Protein Detection kit (Beyotime Institute of Biotechnology). Equal amounts of protein (30 µg) were separated via 10% SDS-PAGE and transferred onto PVDF membranes. Following blocking with 5% skim milk powder for 1 h at 25˚C, the membranes were incubated at 4˚C overnight with primary antibodies targeted against: GAPDH (ab9485,1:5,000; Abcam), NF-κB (ab32360,1:1,000; Abcam), MYD88 (ab219413,1:1,000; Abcam), MMP-2 (ab92536,1:1,000; Abcam), MMP-9 (ab76003,1:1,000; Abcam), TNF-α (ab183218,1:1,000; Abcam),caspase-3 (ab184787,1:1,000; Abcam) and PINCH1 (ab108609,1:1,000; Abcam). Subsequently, the membranes were incubated with corresponding secondary antibodies [Goat Anti-Rabbit IgG H&L (HRP); ab6721, 1:2,000; Abcam] for 1 h at room temperature. Finally, the ECL detection system was used to detect the immunoreactive protein signals and analyzed with ImageJ (v1.8.0.112; National Institutes of Health). GAPDH was used as the loading control.
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9

Western Blotting Analysis of TLR4 Signaling

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Proteins were extracted from the PVN samples by protein lysates, and the protein concentrations were measured using the BSA assay. Equal amounts of protein samples were separated by a 10%–12.5% gel and incubated with TLR4 antibody (GeneTex, GTX64330, 1:1000), anti‐MyD88 antibody (Abcam, ab219413, 1:1000), anti‐NF‐kB p65 (Abcam, ab16502, 1:1000), anti‐IkB alpha antibody (Abcam, ab32518, 1:1000), GAPDH (Cell Signaling, #2118, 1:1000) and anti‐histone antibody (Bios, bs‐17422R, 1:1000) overnight at 4°C. Then, they were incubated with HRP goat anti‐mouse IgG (H + L) (ABclonal, AS003, 1:2000) and goat anti‐rabbit IgG‐HRP (Absin Bioscience Inc., abs20040ss, 1:5000) for 1 h at room temperature on a shaker. The protein strips were developed with Stain‐Free Western blotting technology (Bio‐Rad) and analysed with ImageJ software (Bio‐Rad, v.1.8.0.112).
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10

Immunoblotting, Immunofluorescence, and Flow Cytometry Analysis

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The following antibodies were used for immunoblotting, immunofluorescence, and flow cytometry analysis: anti-Caspase-1 (ab179515; Abcam), anti-NLRP3 (ab263899; Abcam), anti-ASC (sc514414; Santa Cruz), anti-NF-κB P50 (ab32360; Abcam), anti-NF-κB P65 (cst6956; Cell Signaling Technology), anti-phospho–NF-κB P65 (cst3033; Cell Signaling Technology), anti-MyD88 (ab219413; Abcam), anti-IKK-β (ab124951; Abcam), anti-TRAF6 (ab33915; Abcam), anti-GPR81 (ab106942; Abcam), anti-tubulin (11224; Proteintech), anti-pro-IL-1β (cst12242; Cell Signaling Technology), anti–F4/80-PE (123110; BioLegend), anti–CD11b-BV421 (101236; BioLegend), anti–CD68-APC (137007; BioLegend), anti–CD206-AF647 (141712; BioLegend), anti–Ly6G-FITC (11–9668-80; eBioscience), anti-CD16/32 (14–0161-82; eBioscience), anti-CD11b (2185-1-ap; Proteintech), anti-F4/80 (cst70076; Cell Signaling Technology), anti-Ly6G monoclonal antibody (65140-1-ig; Proteintech).
The following reagents were used for this study: caerulein (C9026-1 MG; Sigma, Munich, Germany), ELISA kit for IL-1β, IL-6 and TNF-α (Lianke), alpha-amylase determination kit (BIOSINO, Beijing, China), PBMC isolation kit (LTS1092; TBD), LPS from Escherichia coli O55:B5 (Sigma, Germany), L-lactate assay kit (ab65330; Abcam), sodium L-lactate (L7022; Sigma), L-lactic acid (L1750; Sigma).
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