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9 protocols using gallios 10 color flow cytometer

1

Flow Cytometry Analysis of Lymphocytes

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Cells were incubated with mAbs at RT for 30 min in the dark, then washed and collected in PBS for flow cytometry analysis. All flow cytometry measurements were performed using a Gallios 10-color-flow-cytometer equipped with Kaluza flow cytometry software (both Beckman Coulter). The acquisition and analysis gates were restricted to the lymphocyte gate based on characteristic properties of the cells in forward and side scatter. At least 105 cells were acquired for the analysis.
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2

Multicolor Flow Cytometry of Lymphocytes

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If possible at least 1x106 events per sample were acquired on a Gallios 10-color flow cytometer (Beckman Coulter, Krefeld, Germany). B-cell subsets were identified by multicolor staining using IgD, CD10, CD19, CD20, CD21, CD24, CD27, CD38, CD45, CD80, CD86 and HLA-DR (BD,NJ USA). Phenotypic characterization of T-cell subsets was performed using CD3, CD4, CD8, CD25, CD45, CD45RA, CCR7, CD127 and CD161 (BD, NJ USA). The data was analyzed using the Kaluza Software (Version 1.1, Beckman Coulter, Krefeld, Germany).
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Multiparametric Flow Cytometry Analysis

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Single cell suspensions from tissue and PBMCs were analyzed on a Gallios 10-color flow cytometer (Beckman Coulter) on the day of sample acquisition. At least 5 × 105 events per sample were acquired and lymphocyte subsets were determined using anti-human antibody-conjugates CD45-PE-eFluor610 (HI30; eBioscience), IgD-FITC (clone: IA6-2), CD86-PE (IT2.2), CD86-BV421 (IT2.2), CD38-PerCP/Cy5.5 (HIT2), CD27-PE/Cy7 (O323), CD21-APC (Bu32), CD138-Alexa Fluor 700 (MI15), CD19-APC/Cy7 (HIB19), CD19-APC-Fire 750 (SJ25C1), CD20-Pacific Blue (2H7), CD24-FITC (ML5), CD25-Alexa Fluor 700 (BC96), CCR7-FITC (G043H7), ICOS-PE (C398.4A), CD4-PerCP/Cy5.5 (RPA-T4), CD8-PE/Cy7 (HIT8a), PD1-APC (EH12.2H7), CD45RA-Alexa Fluor 700 (HI100), CD3-APC-Cy7 (HIT3a), CD3-Alexa Fluor 700 (SK7), Interleukin-10-PE (JES3-19F1), CXCR5-PB (J252D4; all Biolegend) and aqua dead cell stain (Life Technologies). Intracellular IL-10 staining was performed using an intracellular staining kit purchased from Biolegend. After live/dead and surface staining cells were fixed and permeabilized according to the manufactures protocol.
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4

Flow Cytometry Staining and Analysis

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Cells were stained as previously published [17 (link)]. All flow cytometry measurements were taken using a Gallios 10-color flow-cytometer equipped with Kaluza flow cytometry software (both Beckman Coulter, USA). At least 105 cells were acquired for analysis.
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5

Flow Cytometry Cell Staining

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A maximum of 1 × 106 cells were incubated with mAbs at RT for 20 minutes in the dark, washed, and collected in PBS with 0.5% BSA for flow cytometry analysis. Flow cytometry was performed using Gallios 10-color-flow-cytometer equipped with Kaluza flow cytometry software version 1.3 (Beckman Coulter, Brea, CA, USA).
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6

Comprehensive T-cell Immunophenotyping by Flow Cytometry

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At least 5 × 105 events per sample were acquired on a Gallios 10-color flow cytometer (Beckman Coulter). Phenotypic characterization of T-cell subsets was performed using CD3-APC-Cy7, CD39-APC, CTLA-4-PE (all BD Biosciences), CD4-PerCP/Cy5.5, CD8-PE/Cy7, PD-1-APC, PD-L1-PE/Cy7, CCR7-FITC, CD25-AF700, CD127-PerCP/Cy5.5, CD45RA-AF700 (all Biolegend), CD45-PE-eFluor610 (eBioscience) and aqua dead cell stain (Life Technologies).
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7

Characterization of B cell subsets

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Briefly, cells were incubated with mAb specific for surface markers in 50 µl PBS for 30 minutes at room temperature in the dark and washed twice before acquisition for surface marker detection. Flow cytometry was performed using a Gallios™ 10-color flow cytometer equipped with Kaluza® flow cytometry software (both Beckman Coulter, Brea, CA). The acquisition and analysis gates were restricted to the lymphocyte gate based on characteristic properties of the cells in forward and side scatter. At least 105 cells were acquired for analysis. Absolute numbers of CD19+ B cells and CD39+CD73+ Breg were calculated by multiplying their frequency values by the absolute number of lymphocytes obtained from whole blood counts.
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8

Isolation and Analysis of PBMCs

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Mononuclear cells (peripheral blood mononuclear cells [PBMCs]) were isolated using Pancoll Human (PAN Biotech, Darmstadt, Germany). Single-cell suspensions of renal allograft specimens were obtained by combined enzymatic (Collagenase-IV and DNAse, Applichem, Darmstadt, Germany) and mechanical (GentleMACS, Miltenyi Biotec, Bergisch Gladbach, Germany) dissociation. Circulating lymphocytic subsets were analyzed on a Beckman Coulter Gallios 10-color flow cytometer using a panel of fluorescent-labeled antibodies (Table S3). The remaining PBMCs were frozen and stored in liquid nitrogen until needed for further analysis. For intracellular staining of IL-10 and GrB, frozen samples were thawed and cultured in AIM V Medium (Life Technologies, Darmstadt, Germany) on a 96-well plate. Cells were stimulated with 5 μg/mL Class B CPG ODN 2006 (Miltenyi Biotech) for 18 h. Fifty ng/mL phorbol myristate acetate (PMA) and 750 ng/mL ionomycin were added for the last 5 h, and Brefeldin A (Biolegend) and Monensin (Biolegend, Fell, Germany) were added for the last 2 h. Cell surface staining was performed first. Phycoerythrin (PE)-conjugated IL-10 (Biolegend, Fell, Germany) and AF647-conjugated GrB (Biolegend) were used for intracellular cytokine staining according to the manufacturer's instructions.
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9

Flow Cytometry Analysis of TILs

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PBMC were thawed and immediately centrifuged with PBS to dispose DMSO. TIL were stained directly. The cells were incubated separately for the different stainings and labeled with mAbs at room temperature for 30 min in the dark. After the incubation time, PBMC were washed and collected in 250 µl PBS-containing 0.5% BSA for flow cytometry analysis. All flow cytometry measurements were performed using a Gallios 10-color-flow-cytometer equipped with Kaluza flow cytometry software (both Beckman Coulter). The acquisition and analysis gates were restricted to the lymphocyte gate based on characteristic properties of the cells in forward and side scatter (FSC and SSC). At least 10 5 cells were acquired for analysis.
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