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Precast sds page gel

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Precast SDS-PAGE gels are a type of laboratory equipment used for protein analysis. They are pre-made polyacrylamide gels that are designed for use in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) techniques. These gels provide a consistent and reliable platform for separating and analyzing proteins based on their molecular weight.

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16 protocols using precast sds page gel

1

Western Blot for RNA Decay Proteins

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Protein lysates were loaded onto precast SDS-PAGE gels (Invitrogen) and subjected to electrophoresis before being transferred onto polyvinylidene difluoride (PVDF; Millipore) membranes. Membranes were blocked with 5% (w/v) skim milk for 1 h at room temperature and incubated overnight with a rabbit anti-UPF1 (1:1000, Cell Signalling #9435), a rabbit anti-EXOSC10 (1:800, Abcam ab50558), a rabbit anti-DIS3 (1:750, Sigma HPA039281) a rabbit anti-Lamin-B1 (1:2000, Abcam ab16048), or a mouse anti-GAPDH (1:2000, Abcam ab8245). Following washes, membranes were incubated with HRP-conjugated secondary anti-rabbit or anti-mouse antibody (1:5000; Chemicon AP182P or AP192P), and exposed using SuperSignal™ West Pico PLUS Chemiluminescent Substrate (Pierce) on a Bio-Rad ChemiDoc™ Imaging System (Bio-Rad).
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2

Western Blot Analysis of MeCP2 and Tra2b

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Total protein lysates were loaded onto precast SDS-PAGE gels (Invitrogen) and subjected to electrophoresis before being transferred onto polyvinylidene difluoride (PVDF) membranes. Membranes were blocked with 5% (weight per volume) skim milk for 1 h at room temperature and incubated overnight with a rabbit anti-MeCP2 (5 μg, Abcam ab2828; Supplementary Fig. 5e, a rabbit anti-Tra2b (10 μg, Abcam ab31353; Supplementary Fig. 5f), or a mouse anti-Gapdh (1:1,000, Abcam ab8245; Supplementary Fig. 5e,f). Following washes, membranes were incubated with HRP-conjugated secondary anti-rabbit or anti-mouse antibody (1:5,000; Chemicon AP182P or AP192P), and exposed using enhanced chemiluminescence reagents (Pierce) on a Kodak Imager (Kodak). Bands were quantified using ImageJ. All uncropped blots are displayed in Supplementary Fig. 6.
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3

Western Blot Analysis of RBM3 Protein

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Total protein lysates were loaded onto precast SDS-PAGE gels (Invitrogen) and subjected to electrophoresis before being transferred onto PVDF membranes. Membranes were blocked with 5% (w/v) BSA in TBS for 2 h at room temperature and incubated overnight with a mouse monoclonal anti-RBM3 antibody (1:5000; Atlas Antibodies) or a rabbit polyclonal anti-actin antibody (1:5000; Sigma). Following washes, membranes were incubated with HRP-conjugated secondary anti-mouse or anti-rabbit antibody (1:5000; Chemicon), and exposed using enhanced chemiluminescence reagents (Pierce) on a Kodak Imager (Kodak). Bands were quantified using ImageJ.
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4

Western Blot Analysis of Lamin B1 and GAPDH

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Nuclear and cytoplasmic cell lysates were loaded onto precast SDS-PAGE gels (Invitrogen) and transferred onto PVDF membranes. Membranes were blocked with 5% skim milk and incubated overnight at 4°C with a polyclonal rabbit anti-Lmnb1 antibody (1:5,000; Abcam) or monoclonal mouse anti-Gapdh antibody (1:1,000; Abcam), followed by a HRP-conjugated secondary anti-rabbit or anti-mouse antibody (1:5,000; Chemicon). HRP-conjugated antibodies were detected using enhanced chemiluminescence reagents (Pierce) on a Kodak Imager (Kodak).
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5

Western Blot Protein Analysis

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Whole cell lysate samples were prepared using Laemmli buffer, resolved in precast SDS-PAGE gels (Life Technologies), and transferred onto Immobilon-PSQ Membranes (Millipore). The membranes were incubated in buffers from the WesternBreeze Blocker/Diluent kit (Life Technologies) and probed with corresponding primary antibodies (S3 Table). Bound antibodies were detected by IRDye secondary antibodies using the Li-COR Odyssey Fc system (Li-COR).
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6

Western Blot Analysis of Cellular Proteins

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The cell pellets and exosomes were lysed in RIPA lysis buffer (10 mM Tris, pH 7.2, 150 mM NaCl, 1% deoxycholate, 1% Triton, 0.1% SDS, 5 mM EDTA) containing complete protease inhibitor cocktail, phospho-stop (Roche Diagnostics, Meylan, France), dithiothreitol (Sigma Aldrich, St. Louis, MO, USA) and vanadate (Life technologies, Carlsbad, CA, USA). Equal amounts of soluble protein (30 micrograms) were loaded in precast SDS-PAGE gels (Life technologies, Carlsbad, CA, USA) and transferred to PVDF membranes for probing with specific primary antibodies overnight at 4 °C and subsequently with horseradish peroxidase-conjugated secondary antibody. Detection of the protein bands was achieved using chemiluminescence (Life technologies, Carlsbad, CA, USA) and exposure on X-ray films (Kodak Rochester, NY, USA). The t-test was used for the comparisons of various measurements between control and experimental conditions as well as between densitometric data in Western blots. p value < 0.05 was considered statistically significant.
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7

Western Blot Analysis of BLIMP1 and XBP1

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Purified human B cells were lysed in RIPA buffer (150 mM NaCl, 1% NP40, 0.5% sodium deoxycholate, 50mM Tris, 0.1% SDS, pH 8.0) with protease inhibitor cocktail (Sigma Aldrich, Saint Louis, MO). Protein concentration was determined using Bio-Rad DC protein assay kit (BioRad, Hercules CA). Precast SDS-PAGE gels (Pierce/Thermo Fisher Scientific, Rockford, IL) were loaded with 10–30 μg of protein and transferred to PVDF membranes (Millipore, Billerica, MA). Western blots were probed with mouse anti-human BLIMP1, rabbit anti-human XBP1 (Novus, Littleton, CO) and mouse anti-human β-tubulin (Calbiochem Chemicals, Gibbstown, NJ). HRP conjugated goat anti-mouse or goat anti-rabbit secondary antibodies (Jackson ImmunoResearch, West Grove, PA) were used to detect specific probed antibodies. Western blots were visualized by autoradiography after incubation with ECL (Perkin Elmer Life Sciences Inc., Boston, MA).
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8

Western Blot Analysis of Bcl-6 in Purified B Cells

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Purified human B cells were lysed in RIPA buffer (150 mM NaCl, 1% NP40, 0.5% sodium deoxycholate, 50mM Tris, 0.1% SDS, pH 8.0) with protease inhibitor cocktail (Sigma Aldrich, Saint Louis, MO). Protein concentration was determined using Bio-Rad DC protein assay kit (BioRad, Hercules CA). Precast SDS-PAGE gels (Pierce/Thermo Fisher Scientific, Rockford, IL) were loaded with 10–30 μg of protein and transferred to PVDF membranes (Millipore, Billerica, MA). Western blots were probed with rabbit anti-human Bcl-6 (Cell Signaling Technology, Beverly, MA) and mouse anti-human GAPDH (Calbiochem Chemicals, Gibbstown, NJ). HRP conjugated goat anti-mouse or goat anti-rabbit secondary antibodies (Jackson ImmunoResearch, West Grove, PA) were used to detect specific probed antibodies. Western blots were visualized by autoradiography after incubation with ECL (Perkin Elmer Life Sciences Inc., Boston, MA).
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9

Western Blot Analysis of Liver Proteins

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Liver tissues were homogenized and sonicated in RIPA lysis buffer (Sigma-Aldrich, St. Louis, MO) containing protease inhibitor cocktail and phosphostop (Roche Diagnostics, Indianapolis, IN), and total protein was extracted by centrifugation. A total of 30 μg protein was resolved on 4–12% precast SDS-PAGE gel (Invitrogen, Grand Island, NY) and transblotted onto a polyvinylidene fluoride membrane (Bio-Rad, Hercules, CA). Membranes were probed with antisera against p-JNK, JNK, p-PDK, PDK, p-AKT, AKT, p-PKCζ, PKCζ, p-PERK, PERK, p-elF2α, elF2α, p-IRE-1, IRE-1, GRP78, CHOP, caspase-3, cleaved caspase-3, ATF-6α, XBP-1, BCL-2, Bax, LC-3B and β-actin (Cell Signaling Technology, Danvers, MA). Isotype-matched horseradish peroxidase conjugated secondary antibodies, enhanced chemiluminescence substrate (Pierce, Rockford, IL) and a FluorChem 8900 digital imaging system (AlphaInnotech, San Leandro, CA) were used to visualize protein bands. Densitometric analyses was performed with VisionWorks® Software, version 6.8 (UVP, Upland, CA).
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10

Western Blot Analysis of Liver Proteins

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Liver tissues were homogenized and sonicated in RIPA lysis buffer (Sigma-Aldrich, St. Louis, MO) containing protease inhibitor cocktail and phosphostop (Roche Diagnostics, Indianapolis, IN), and total protein was extracted by centrifugation. A total of 30 μg protein was resolved on 4–12% precast SDS-PAGE gel (Invitrogen, Grand Island, NY) and transblotted onto a polyvinylidene fluoride membrane (Bio-Rad, Hercules, CA). Membranes were probed with antisera against p-JNK, JNK, p-PDK, PDK, p-AKT, AKT, p-PKCζ, PKCζ, p-PERK, PERK, p-elF2α, elF2α, p-IRE-1, IRE-1, GRP78, CHOP, caspase-3, cleaved caspase-3, ATF-6α, XBP-1, BCL-2, Bax, LC-3B and β-actin (Cell Signaling Technology, Danvers, MA). Isotype-matched horseradish peroxidase conjugated secondary antibodies, enhanced chemiluminescence substrate (Pierce, Rockford, IL) and a FluorChem 8900 digital imaging system (AlphaInnotech, San Leandro, CA) were used to visualize protein bands. Densitometric analyses was performed with VisionWorks® Software, version 6.8 (UVP, Upland, CA).
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