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7 protocols using sodium pyruvate

1

Candida Growth and Antifungal Assays

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All strains and primers used in this study are listed in Table S2A and S2B, respectively. Candida strains were cultured routinely at 30°C in either YPD media (1% yeast extract, 2% peptone, and 2% dextrose) or YPG media (1% yeast extract, 2% peptone, and 2% glycerol). Medium plates were supplemented with 2% agar. Drug stock solutions were prepared using dimethyl sulfoxide (DMSO) as a solvent for BE (6.4 mg/mL) (Aladdin) for the spotting assay and SPR analysis and for TAMRA-N3 (5.123 mg/mL) (synthesized in this study) and biotin-N3 (3.123 mg/mL) (synthesized in this study) for competition experiments; using phosphate-buffered saline (PBS) as a solvent for FLC (1.0 mg/mL) and BE (1.0 mg/mL) for Galleria mellonella virulence assays; using 80% DMSO-20% Tween 80 as a solvent for BE (6.4 mg/mL) for competition experiments and microscale thermophoresis (MST) analysis and label-BE (2.728 mg/mL) (synthesized in this study) for competition experiments; and using sterilized double distilled water as a solvent for PLG (1.0 mg/mL) (Sigma-Aldrich), 3-PG (128 mg/mL) (Shyuanye, China), and sodium pyruvate (128 mg/mL) (Sangon Biotech, China). Once in solution, drugs were stored at −40°C.
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2

Cell Culture Protocols for Cancer and Endothelial Models

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4T1 (murine breast cancer cells), B16F10 (murine melanoma cells), Renca (murine renal carcinoma cells), and PUMC-HUVEC-T1 (human endothelial cell) were purchased from Procell Life Science&Technology Co., Ltd. L-929 (murine fibroblast) was purchased from Wuhan Servicebio Technology Co., Ltd. All the cells were cultured in the DMEM/RPMI-1640/MEM culture medium (Sangon Biotech (Shanghai) Co., Ltd., E600003, and E600028) with 10% FBS (Excell Bio, Shanghai, FSP500) and 1% penicillin-streptomycin (MacGene, Beijing, CC004). In addition, an additional 1 mmol/L sodium pyruvate (Sangon Biotech (Shanghai) Co., Ltd., A600884) and 2 mmol/L l-glutamine (Sangon Biotech (Shanghai) Co., Ltd., A100374) were added to the Renca medium.
The cells utilized in the experiments were cultured in the carbon dioxide cell culture box (Thermo Fisher-Forma 371) with 5% CO2 at 37 °C.
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3

Optimizing LukED Expression in S. aureus

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Staphylococcus aureus strain Newman was cultured at 37°C in yeast extract-Casamino Acids-pyruvate (YCP) medium [3% (w/v) yeast extract (Oxoid), 2% (w/v) Casamino Acids (Amresco, Washington, DC, United States), 2% (w/v) sodium pyruvate (Sangon Biotech, Shanghai, China), 0.25% (w/v) Na2HPO4, and 0.042% (w/v) KH2PO4, pH 7.0)], which is able to promote the highest expression of LukED (Alonzo and Torres, 2014 (link)).
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4

HUVECs Culture with Supplements

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The HUVECs were cultured in DMEM (Hyclone; GE Healthcare Life Sciences, Logan, UT, USA) enriched with 10% fetal bovine serum (Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA), bovine brain extract (12 µg/ml), L-glutamine (2 mmol/l) and sodium pyruvate (1 mmol/l) in the presence of penicillin (100 U/ml) and streptomycin (100 µg/ml; Sangon Biotech Co., Ltd).
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5

Mitochondrial Dysfunction EV Isolation

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To disrupt mitochondrial function, 1 µg mL−1 rhodamine‐6G (R4127, Merck, USA) was added to the MSC medium while supplementing with 50 µg mL−1 uridine (A610570, Sangon Biotech, China) and 275 µg mL−1 sodium pyruvate (A501259, Sangon Biotech, China) to support glycolysis, and treated for 48 h. Conditioned medium was collected and dysfunctional mitochondria EVs (Rho‐Norm‐EV and Rho‐Hypo‐EV) were isolated in the same way as normal MSC‐EVs.
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6

INS-1 cell line response to high glucose and palmitic acid

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The INS-1 cell line was obtained from AiYan Biological technology Co., Ltd. (Shanghai, China). The cells were cultured in RPMI-1640 medium (Gibco, Grand Island, NY, USA) supplemented with streptomycin (100 μg/ml; Sigma-Aldrich, St. Louis, MO, USA), penicillin (100 U/ml; Sigma-Aldrich), β-mercaptoethanol (50 μM; Gibco), sodium pyruvate (0.11 g/L; Sangon Biotech Co., Ltd., Shanghai, China), and fetal bovine serum (10%; Gibco) at 37°C in a humidified atmosphere containing 5% CO2. The INS-1 cells were treated as follows: a control group: no treatment; HG + PA group: high glucose (30 mM glucose [Sangon Biotech Co., Ltd.]) + high fat (400 μM palmitic acid sodium [Sigma-Aldrich]); HG + PA + oxymatrine (1 μM) group: high glucose (30 mM glucose) + high fat (400 μM palmitic acid sodium) + oxymatrine (1 μM [Sigma-Aldrich]); HG + PA + oxymatrine (10 μM) group: high glucose (30 mM glucose) + high fat (400 μM palmitic acid sodium) + oxymatrine (10 μM). The concentrations of oxymatrine were based on the results of our previous work [20 (link)].
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7

HBMEC Ischemia-Reperfusion Injury Model

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Human brain microvascular endothelial cells (HBMECs) collected from the BeNa Culture Collection (Beijing, China, http://www.bnbio.com/default.htm) were cultivated in RPMI-1640 medium with 2 mM glutamine (Sangong Biotech, Shanghai, China), 1 mM sodium pyruvate (Sangong Biotech, China), 10% fetal bovine serum (HyClone, Logan, UT, USA) and 10 mM non-essential amino acids under 5% CO2 at 37 °C. Cells with a density of 5 × 104 cells/well in a 96-well plate were divided into 4 groups: non-oxygen and glucose deprivation/reoxygenation group (non-OGD/R): cells were non-OGD/R; oxygen and glucose deprivation/reoxygenation group (OGD/R): cells received OGD/R; DMSO (dimethyl sulfoxide) group (OGD/R + DMSO): cells received OGD/R and same volume of 1% DMSO; luteolin group (OGD/R + luteolin): cells received OGD/R and 90 μM luteolin (Shang Hai Haoran Biological Technology Co., Shanghai, China) at a purity over 90% dissolved in saline plus 1% DMSO.
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