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6 protocols using ultrapure dnase rnase free distilled water

1

Oligonucleotide Synthesis and Purification

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Bioneer Co. (Daejeon, South Korea) synthesized and purified the oligonucleotides (Table S1) used in this work via polyacrylamide gel electrophoresis (PAGE), except for the hairpin substrate probe (HP), which underwent purification by HPLC. DNase I, Escherichia coli (E. coli) RNase H, ribonucleoside triphosphate (rNTP) set, exonuclease I (Exo I), exonuclease III (Exo III), and T7 RNA polymerase were obtained from Enzynomics (Daejeon, South Korea). Lambda exonuclease (λ Exo), Eco RI, and Uracil DNA glycosylase (UDG) were supplied by New England Biolabs Inc. (Beverly, MA, USA). DFHBI and DFHBI-1T were acquired from Sigma-Aldrich (St. Louis, MO, USA). Ultrapure DNase/RNase-free distilled water was supplied by Bioneer Co. and used for all assays. Other reagents used in this work were of analytical grade and used without any additional purification.
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2

Cerium Oxide Nanoparticle Characterization

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Cerium (IV) oxide nanoparticles (CeO2 NPs) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium acetate, sodium phosphate, and sodium pyrophosphate were purchased from Samchun Chemical (Seoul, Korea); SYBR Green II and TMB were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Deoxynucleoside triphosphate (dNTPs) and ribonucleoside triphosphate (rNTPs) were purchased from Enzynomics (Seoul, Korea). All DNA oligonucleotides were synthesized by Integrated DNA Technologies (Coralville, IA, USA). Ultrapure DNase/RNase-free distilled water from Bioneer (Daejeon, Korea) was used in all experiments. All chemicals used in this study were of analytical grade.
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3

Glucose Detection via CeO2 Nanoparticles

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All DNA oligonucleotides used in this study were synthesized and purified with high performance liquid chromatography (HPLC) by Bioneer® (Daejeon, Korea). The sequence information of oligonucleotides employed in this study is in Table S1. The personal glucose meter (PGM) whose dynamic range for glucose detection is from 0.6 to 33 mM was purchased from Accu-Chek (Roche, Basel, Switzerland). Cerium (IV) oxide nanoparticle (CeO2 NP), sodium acetate, glucose, ethidium bromide (EtBr), hydroethidine, and 2,5-dihydroxybenzoic acid (DHB) were purchased from Sigma-Aldrich (St. Louis, MO, USA). The deoxynucleoside triphosphate (dNTP) and i-TaqTM DNA polymerase were purchased from Intron Biotechnology Inc. (Daejeon, Korea). Ultrapure DNase/RNase-free distilled water (DW) purchased from Bioneer® was used in all experiments. All chemicals used in this study were of analytical grade.
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4

Oligonucleotide Synthesis and Purification

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All oligonucleotides used in this study were synthesized from Bioneer® (Daejeon, Korea) and purified by HPLC. The sequences of oligonucleotides are listed in Table S2. Lysozyme, papain and human serum were purchased from Sigma-Aldrich (St Louis, MO, USA). STV and exonuclease I (Exo I) were purchased from Thermo Fisher Scientific (Waltham, MA, USA) and New England Biolabs Inc. (Beverly, MA, USA), respectively. All other chemicals were of analytical grade and used without further purification. Ultrapure DNase/RNase-free distilled water (DW) purchased from Bioneer® (Daejeon, Korea) was used throughout all the experiments.
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5

Thiol-modified DNA Probe Synthesis and Characterization

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Thiol-modified DNA probe (5′-thiol-T20-3′) was synthesized and purified by high-performance liquid chromatography (HPLC) by Integrated DNA Technologies (Coralville, USA). Alkaline phosphatase (ALP), sodium pyrophosphate (PPi), copper chloride (CuCl2), tris(hydroxymethyl)aminomethane, potassium chloride (KCl), sodium chloride (NaCl), ascorbic acid, 3-morpholinopropane-1-sulfonic acid (MOPS), potassium ferricyanide (K3[Fe(CN)6]), potassium ferrocyanide (K4[Fe(CN)6]), lysozyme, albumin, avidin, glucose oxidase, adenosine 5′-triphosphate (ATP), creatinine, cysteine, glucose and human serum were purchased from Sigma-Aldrich (St. Louis, USA). Ultrapure DNase/RNase-free distilled water (DW) was purchased from Bioneer® (Daejeon, Korea).
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6

Leptospira DNA Amplification Protocol

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All oligonucleotides used in this study were synthesized and purified using PAGE by Bioneer (Daejeon, South Korea), except for the trigger, which was purified by Bio-RP (Bioneer, Daejeon, South Korea). The oligonucleotide sequences are listed in Table S1. The Klenow fragment (3′ → 5′ exo-), 10X NEBuffer 2 (100 mM Tris–HCl, pH 7.9, 500 mM NaCl, 100 mM MgCl2, and 10 mM DTT), and deoxynucleotide solution mixture (dNTPs) were purchased from New England Biolabs, Inc. (Beverly, MA, USA). SYBR Green I (10,000X) was purchased from Invitrogen (Carlsbad, CA, USA). Leptospira interrogans genomic DNA was purchased from ATCC (Manassas, VA, USA). Human serum was purchased from Sigma-Aldrich (St. Louis, MO, USA). Ultrapure DNase/RNase-free distilled water (DW) was purchased from Bioneer (Daejeon, South Korea) and used in all experiments. All other chemicals were of analytical grade and used without further purification.
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