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Gf d filters

Manufactured by Cytiva
Sourced in United Kingdom

GF/D filters are a type of laboratory equipment used for filtration. They are designed to separate solid particles from liquids or gases. The filters feature a glass fiber composition that provides efficient filtration performance.

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4 protocols using gf d filters

1

Permafrost Sediment Characterization

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Grain size distribution was analyzed by dispersing permafrost sediment in 0.01 M tetrasodium pyrophosphate and demineralized H2O by 2 min of ultrasound and then analyzed by laser diffraction on a Mastersizer 2000 (Malvern Instruments Ltd, Malvern, UK). The pH-value was measured in soil slurries of 1:5 w/v ratio of soil to demineralized H2O using a PHM 80 pH-meter (Radiometer, Copenhagen, Denmark). Water/ice content was determined gravimetrically by drying a permafrost subsample to a constant mass at 105 °C. Total C and N were determined by combustion of dry soil at 1200 °C and 800 °C, respectively, followed by analyses on a TrueSpec CN determinator (LECO Corporation, St Joseph, MO, USA). Extracts were made for the analysis of dissolved organic carbon (DOC), nitrate (NO3) and ammonium (NH4+) by shaking 1:5 w/v of sediment to demineralized H2O for 5 hours followed by centrifugation at 4300 RPM for 10 min and filtering the supernatant through GF/D filters (Whatman™, Maidstone, UK). The concentration of DOC was measured on the filtered soil extracts by first removing inorganic C by acidifying sample extracts with 2 M HCl, and then analyzing them on a TOC-5000A/SSM-5000A (Shimadzu, Kyoto, Japan). Concentrations of NO3 and NH4+ were determined by flow injection analysis using a FIAstar™ 5000 (FOSS, Hillerød, Denmark) following the manufacturer′s instructions.
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2

Quantifying Dissolved and Gaseous Nitrogen Compounds

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Soluble nitrogen species (NO3, NO2, and NH4+) and gas components including C2H6, CO2, and N2 in the headspace were determined as described previously [16 (link)]. The butane, 13C-labelled butane, 13C-labelled ethane, 13CO2, 29N2, and 30N2 in gaseous samples were quantified using a GC (7890A, Agilent, USA) coupled to a quadrupole mass spectrometer (MS, 5957C inert MSD, Agilent, USA). The GC–MS was operated as described in the supplementary text.
The isotopic fractions of 15N-labelled nitrogen-oxyanions (NO3 + NO2) were analysed using a Thermo Delta V isotope ratio mass spectrometer (IRMS; Thermo Fisher Scientific, USA) following conversion to N2O via the denitrifier protocol [38 (link)]. To measure 15N-labelled NO3, NO2 was removed from the liquid samples with 4% (wt/vol) sulfamic acid in 10% HCl as described previously [39 (link)]. The fraction of 15N in NO2 was calculated according to the difference between 15N fraction in nitrogen-oxyanions (NO3 + NO2) and that in NO3. To analyse 15N-labelled NH4+, NH4+ was trapped in GF/D filters (Whatman, UK) with a microdiffusion method [40 (link)] and then combusted before IRMS analysis.
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3

Freshwater and Peat Lake Metagenomic Sampling

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Freshwater sampling from Ein Afek reserve (Israel) was performed on 25/11/2019 (32°50'44.15"N 35°6'49.04"E). Twenty liters of water from the surface were filtered through GF/D filters (Whatman) and collected on a 0.22 µm Durapore filter (Millipore). The Durapore filter was suspended in a lysis buffer (50 mM Tris-HCl, pH 8.0, 40 mM EDTA, pH 8.0, 0.75 M sucrose) and flash frozen using liquid nitrogen on site.
Peat lake sampling was performed on 18/10/2018 in Agamon Ha'Hula peat lake, Israel at two locations: A -the main water body (33°06'22.4"N 35°36'09.4"E), and B -a shallow pond (33°06'24.4"N 35°36'04.7"E). Forty liters of water from 20 cm depth were filtered through GF/D and a 0.22 µm Durapore filter (Millipore). DNA from both sample sites was extracted from the filter using a phenol-chloroform protocol (Wright et al. 2009) .
Fosmid libraries of peat lake and freshwater samples were constructed with a pCC2Fos copy control library kit according to manufacturer's protocol (Epicentre Biotechnologies, Cat. No. CCFOS059), and 198 96-well plates (66 from each sampling location) were stored in LB-glycerol 7% at -80 °C.
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4

Metagenomic DNA Extraction from Lake Kinneret

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Sampling was performed on 1 September 2015 at 10:00 in Lake Kinneret, Station A (32° 49.27792 N, 35° 35.34253 E). Forty litres of water from 3-m depth were filtered through GF/D filters (Whatman) and collected on a 0.22-μm Durapore filter (Millipore). The Durapore filter was suspended in lysis buffer (50 mM Tris-HCl, pH 8.0, 40 mM EDTA, pH 8.0, 0.75 M sucrose) and frozen using liquid nitrogen. DNA was extracted from the filter using a phenol–chloroform protocol26 .
Fosmid libraries were constructed with a pCC1Fos copy control library kit according to the manufacturer’s protocol (Epicentre Biotechnologies, Cat. No. CCFOS110), and 75 96-well plates were stored in 7% LB-glycerol at −80 °C.
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