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3 protocols using ssrna41 lyovec

1

Modulating Monocyte-pDC Crosstalk

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Two million freshly isolated PBMCs or 2 x 105 monocytes incubated with or without 25,000 purified pDCs, were cultured in 1 ml of complete media and treated for 1–4 days with the TLR7/8 agonist R848 (Invivogen) at 1 μg/mL. Increasing concentrations of HIV-1 LTR derived GU-rich ssRNA40/LyoVec (5′GCCCGUCUGUUGUGUGACUC-3′) and negative control RNA, where U nucleotides were replaced with adenosine, ssRNA41/LyoVec (5′GCCCGACAGAAGAGAGACAC-3′) (26 (link)) (Invivogen), and recombinant human IFNα2A (PBL Interferon) were added to cells. The soluble IFN receptor, B18R (Affymetrix), was added (at 0.1μg/mL) to cells directly preceding stimulation with the above TLR7/8 agonists in order to neutralize type I IFN in the supernatant. For time course experiments, 500 μL of supernatant were removed and replaced with fresh media at 24 hr intervals. Concentrations of CXCL13 and IFNα in culture supernatants were determined by ELISA according to the manufacturers’ instructions (IFNα kit from PBL Biomedical Laboratories; CXCL13 kits from R & D systems).
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2

Radiolabeled Transporter Substrates Assay

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Elacridar, Ko143, dipyridamole, and 6-S-[(4-Nitrophenyl)methyl]-6-thioinosine (NBMPR) were purchased from Tocris (Minneapolis, MN). Verapamil was purchased from Sigma-Aldrich (St. Louis, MO). All compounds were dissolved in DMSO and stored at −20°C until use. CL097, ssRNA40/LyoVec and ssRNA41/LyoVec, and imiquimod were purchased from InvivoGen (San Diego, CA). The anti-MDR1/ABCB1 monoclonal antibody (D3H1Q) was obtained from Cell Signaling Technology (Danvers, MA). The anti-BCRP antibody (clone BXP-21) was obtained from Millipore Sigma (Burlington, MA). ENT1 (clone F-12) and ENT2 (clone A-8) monoclonal antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA). [3H]-Entecavir (6.4 Ci/mmol) and [adenine-2,8-3H]-Tenofovir (17.1 Ci/mmol) were acquired from Moravek Biochemicals, Inc. (Brea, CA). [N-methyl-3H]-Sofosbuvir (80 Ci/mmol) was purchased from American Radiolabeled Chemicals (St. Louis, MO). Corning Gentest ABC transporter membranes were purchased from Corning (Corning, Woburn, MA).
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3

Lung Epithelial Cell Response to Viral and Immune Stimuli

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Six-well culture plates were coated in basement membrane matrix (Geltrex; Invitrogen) diluted to 0.1 mg/ml in RPMI. BEAS-2B cells (0.5 × 106 per well) in culture medium containing 2% FCS were added and allowed to form an adherent monolayer overnight. For viral infections, RSV was added at a multiplicity of infection (MOI) of 1.0 in serum-free RPMI medium for 2 h, and then, an equal volume of 4% FCS culture medium was added to each well and the plates were incubated for the desired length of time.
The following cytokines and TLR agonists were used for stimulations: interleukin 1β (IL-1β), IL-10, IL-17, IL-22, gamma interferon (IFN-γ), transforming growth factor beta (TGF-β), IFN-λ1, IFN-λ2, IFN-α, IFN-β, and IFN-ω (all from Peprotech, United Kingdom) and the TLR agonists lipopolysaccharide (LPS), Pam3CSK4, HKLM, poly(I·C) high molecular weight (HMW), poly(A·U), imiquimod, R848, CL075, single-stranded RNA 40 (ssRNA40)/Lyovec, ssRNA41/Lyovec, and ODN 2006 (all from Invivogen). All stimulations were carried out in culture medium with 2% FCS.
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