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4 protocols using pd98059

1

Investigating Signaling Pathways in Cell Biology

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Nocodazole and peroxovanadate (VOOH) were purchased from Sigma. EGF was purchased from R&D systems. Y27632 was purchased from Tocris Bioscience and the MEK inhibitor, PD98059 was purchased from A.G. Scientific. The reporter constructs 5XcollTRETATA-Luc (TRE-TATA), 5Xjun2TRE-TATA-Luc (Jun2-TATA) and TATA-Luc (TATA) [32 (link)] were a gift from P. Angel (Heidelberg, Germany). The expression vector for dominant-negative c-Jun, pEGP-TAM67 [4 (link)], was kindly provided by R.F Hennigan, (New York, USA). Expression vector for miR-10b [40 (link)] was provided by Agami R. (The Netherlands Cancer Institute, Amsterdam). TK-Rnl (Promega), pCDNA3 (Invitrogen) and pEGFP-C3 (Clontech) are commercial vectors. The expression vector for NF1-GRD-GFP was provided by Kloog Y. (Tel Aviv University, Tel Aviv) and the full length NF1 (NF1-GFP) was a gift from McCormick F. (University of California, San Francisco). Constitutively active RhoC construct, RhoC G14V 3XHA-tagged, was purchased from Missouri S&T cDNA Resource Center. Anti-hsa-miR-10b (miScript miRNA Inhibitor) and control oligonucleotide were purchased from Qiagen. A panel of shRNA constructs for c-Jun and a control vector encoding non-effective 29-mer cassette, were purchased from OriGene Technologies, Inc. shRNA constructs with the strongest effect on c-Jun (c-Jun 5 and c-Jun 7) were used for further experiments.
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2

Investigating Crocin and LPS-Induced Cellular Responses

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Crocin (Figure 1(a)), LPS (phenol extracted from Salmonella enteritidis), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), actinomycin D (Act. D), cycloheximide (CHX), 2-(3,6-bis(acetyloxy)-2,7-dichloro-9H-xanthen-9-yl)benzoic acid acetoxymethyl ester (Fluo-3/AM), and other reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA). Cobalt protoporphyrin (CoPP) and zinc protoporphyrin IX (ZnPP) were bought from Enzo Life Sciences, Inc. (Farmingdale, NY, USA). LY294002, PD98059, SP600125, and SB203580 were obtained from A.G. Scientific (San Diego, CA, USA). Nifedipine, 1,2-bis (o-aminophenoxy) ethane-N,N,N′,N′-tetraacetic acid tetra (acetoxymethyl) ester (BAPTA/AM), and calmidazolium chloride were acquired from Calbiochem (EMD Millipore, Billerica, MA, USA). KN92, KN93, and KN62 were purchased from Cayman Chemical (Ann Arbor, MI, USA) and Calbiochem.
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3

Anti-inflammatory Effects of Dioscorea moniliforme Extract

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Cobalt protoporphyrin (CoPP) was purchased from Enzo Life Sciences, Inc. (USA). Actinomycin D (AD), cycloheximide (CHX), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and LTA from Staphylococcus aureus were purchased from Sigma-Aldrich Co. (USA). LY294002, PD98059, SP600125 and SB203580 were obtained from A.G. Scientific (USA). The antibodies for iNOS, HO-1, Nrf2, Akt, p38, TATA-box binding protein (TBP) and histone deacetylases (HDAC) were purchased from Santa Cruz Biotechnology (USA), the antibodies for phospho-Akt and phospho-p-38 were purchased from Cell Signaling Technology (USA), and the anti-tubulin antibody was purchased from Bio Genex (USA). The dry shoot systems of D. moniliforme Sw. were obtained and extracted as described previously [30] . In brief, the dry shoot systems (300 g) were extracted with distilled water at 100ºC for 4 h. The extract was filtered through a 0.45-μm filter, freeze-dried (yield: 8 g), and stored at 4ºC. The dried extract was dissolved in phosphate-buffered saline (PBS) and filtered through a 0.22 μm-filter before use.
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4

Immune Modulation by SARS-CoV-2 Proteins

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GMI (Cat: 767593), dissolved in sterilized PBS (1 mg/mL), was obtained from MycoMagic Biotechnology Co., Ltd. (New Taipei, Taiwan) [22] . LPS (E. coli O55:B5) was purchased from Sigma-Aldrich. SARS-CoV-2-envelope (E) protein (NBP2–90986) was purchased from Novus Biologicals (CO, USA). SARS-CoV-2-spike (S) protein (SPN-C52H9) was purchased from ACROBiosystems (DE, USA). Phorbol 12-myristate 13-acetate (PMA; P-1039-1MG) was purchased from AG Scientific (CA, USA). Dexamethasone was purchased from Cayman Chemical (Ann Arbor, MI, USA). PD98059 (ERK inhibitor; 167869-21-8) and SB203580 (P38 inhibitor; 152121-47-6) were purchased from AG Scientific (CA, USA).
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