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3 protocols using 7 aad labeling

1

Multiparametric Flow Cytometry of Cell Surface Markers

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Cells were collected by trypsinization and stained for 30 minutes with the following primary antibodies: CD105, CD44, CD45, CD117, CD133 (Abcam, Cambridge, MA, http://www.abcam.com), and CD31 (Sigma‐Aldrich). Cells were then incubated for 15 minutes with anti‐rabbit or anti‐mouse Alexafluor‐488 (Thermo Fisher) secondary antibodies. Also, directly conjugated PE‐CD326/EpCam (Biolegend, San Diego, CA, www.biolegend.com) and FITC‐CD90 (Dianova, Hamburg, Germany, http://www.dianova.com) antibodies were used, together with 7AAD labeling (BD Biosciences) to exclude dead cells. Appropriate isotype‐matched immunoglobulins were used as controls, and appropriate preliminary experiments were performed for compensation settings. A total of 10,000 events were recorded with a FACSAria II cytometer (BD Bioscience) using DiVa Software (version 6.1.1; BD Biosciences). Analysis was performed using Flowing software (version 2.5.1; Turku Centre for Biotechnologies, Turku, Finland, http://www.btk.fi).
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2

Phenotypic and Transduction Efficiency of Stem Cells and T Cells

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The phenotype and efficiency of transduction of hCD34+ HSPCs and T lymphocytes were analyzed by Flow Cytometry (FACS Canto II Instrument and DIVA software). hCD34+ HSPCs were stained with PE-conjugated anti-CD90 antibody (BD PharMingen), VioBlue-conjugated anti-CD34 antibody (Miltenyi Biotec), and antigen-presenting cell (APC)-conjugated anti-CD133 antibody (Miltenyi Biotec).
PBMCs were stained with anti-CD3 monoclonal antibody before and after activation (Miltenyi Biotec). In selected experiments, T cell memory phenotype was detected by staining with monoclonal antibodies specific for CD3 (VioGreen-conjugated), CD8 (APC-Vio770-conjugated), CD45RA (PE-Vio770-conjugated), CD62L (VioBlue-conjugated), and CD95 (APC-conjugated) (Miltenyi Biotec). For both cell types, cell mortality and transduction efficiency were evaluated by 7-AAD labeling (BD PharMingen) and by the level of GFP expression, respectively.
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3

Stromal Vascular Fraction Isolation and Characterization

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Antibodies used include SCA1 Pacific Blue (BioLegend, 108120), CD45 PE-Cy7 (eBioscience, 25-0421-82), CD11b APC-Cy7 (BioLegend, 101226), and CD31 APC (eBioscience, 17-0311-82). SVF was prepared as for cell culture, except that following centrifugation, the resulting cell pellet was resuspended in 1 ml ACK Lysing Buffer (Invitrogen) to remove red blood cells. After inactivation with Hank’s balanced salt solution (HBSS)/2% FBS, samples were centrifuged again and resuspended in HBSS/2% FBS for antibody labeling for flow cytometry or fluorescence-activated cell sorting (FACS). Samples were analyzed on a BD LSR Fortessa analyzer or sorted on a BD FACS Aria II. Cell gating was based on comparison with unstained and fluorescence-minus-one-stained controls. Single live cells were discriminated by forward-scatter and side-scatter analysis and 7-AAD labeling (BD Bioscience), respectively. Cells were sorted into serum-free DMEM media for gene expression analysis or into complete media for cell culture. Flow cytometry standard files were analyzed using FlowJo version 10.
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