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31 protocols using streptavidin pe cy7

1

Immunocytochemical and Flow Cytometric Analysis

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For immunocytochemical analysis, goat anti-Sox17 antibody (1:100, R&D systems), rabbit anti-Hnf3b/Foxa2 (1:200, Millipore), mouse anti-Cdx2 (1:500, BioGenex) and rabbit anti-GFP (1:1000, MBL) were used. For flow cytometric analysis, rat anti-E-cadherin (1:500, TaKaRa), biotin anti-Cxcr4 (1:500, BD Biosciences), PE anti-CD55/Daf1 (1:100, BD Biosciences), PE/Cy7 Streptavidin (1:500, Biolegend) antibodies were used. E-cadherin antibody was labeled by Allophycocyanin Labelling Kit-SH2 (DOJINDO). For Western blot analysis, mouse anti-α-tubulin (1:2000, 12G10, Developmental Studies Hybridoma Bank), mouse anti-phospho-Histone H3 (Ser10) antibody (1:500, Millipore), rabbit anti-Sox17 antibody (1:100, Sigma-Aldrich) and mouse anti-PCNA (1:500, Oncogene, NA03-200UG) were used.
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2

Isolation of Skeletal Muscle Stem Cells

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Hindlimb muscles from 3-month-old C56BL/6J wild-type mice were dissociated into single cells by enzymatic digestion and live cells were isolated by FACS. Skeletal MuSCs were sorted following described methods (Liu et al., 2015 (link)). Briefly, hindlimb muscles from 3-month-old adult wild-type mice were minced and digested with collagenase for 1 h and MuSCs were released from muscle fibers by further digesting the muscle slurry with collagenase/dispase for an additional 30 min. After filtering out the debris, cells were incubated with the following primary antibodies: biotin anti-mouse CD106 (anti-VCAM1, BioLegend 105704; 1:75), PE/Cy7 Streptavidin (BioLegend 405206; 1:75), Pacific Blue anti-mouse Ly-6A/E (anti-Sca1, BioLegend 108120; 1:75), APC anti-mouse CD31 (BioLegend 102510; 1:75) and APC anti-mouse CD45 (BioLegend 103112; 1:75). Satellite cells were sorted by gating VCAM1-positive, Pacific Blue-labeled Sca1-negative, and APC-labeled CD31/CD45-negative cells. SYTOX Green (ThermoFisher Scientific S7020; 1:30,000) was used as a counterstain.
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3

Comprehensive Immunophenotyping Panel

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Alexa Fluor 488 NK1.1 (PK136), Biotin-CD4 (GK1.5), Alexa Fluor 488-CD4 (GK1.5), APC-eFluor 780-CD4 (GK1.5), FITC-CD3ε (17A2), Alexa Fluor 647-CD3ε (17A2), Alexa Fluor 488-CD206, Brilliant Violet 421-CD3ε (17A2), FITC-F4/80, Alexa Fluor 488-CD3ε (145-2C11), Alexa Fluor 647 CD49b (DX5), Pacific Blue-CD49b (DX5), PE-NK1.1 (PK136), Brilliant Violet 421 NK1.1 (PK136), PE/Cy5-CD4 (GK1.5), APC-TCRγδ (GL3), Biotin-IFN-γRα (2E2), Brilliant Violet 421-CD25 (PC61), PE-CD25 (PC61), Biotin-CD122 (5H4), PE/Cy7-IFN-γ (XMG1.2), PE-GM-CSF (MP1-22E9), Pacific Blue-TNF-α (MP6-XT22), PercCP/Cy5.5-CD69, Biotin-BrdU (Bu20a), FITC-Ki67 (16A8), Alexa Fluor 647-streptavidin, APC-Cy7-Streptavidin, PE-Cy7-Streptavidin, Brilliant violet 421-CD62L (MEL-14) and rabbit polyclonal anti-Asialo-GM1 (aGM) antibodies were purchased from Biolegend (San Diego, CA). APC-RORγt (AFKJS-9), APC-T-bet (4B10) and PE/Cy7-T-bet (4B10) were procured from eBioscience (San Diego, CA). Anti-NK1.1 (PK136), anti-F4/80 (Cl:A3–1), anti-Gr1 (RB6-8C5) and isotype control antibodies for in vivo use were procured from BioXcell (West Lebanon, NH). Alexa Fluor 647-labeled CD1d tetramer (mCD1d, PBS-57) and unloaded control tetramer were received from NIH Tetramer Core Facility (Atlanta, GA). 5-Bromo-2′-deoxyuridine (BrdU) was purchased from Sigma-Aldrich.
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4

Isolation of Muscle Stem/Progenitor Cells

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Muscle stem/progenitor cells were isolated as described previously31 (link),53 (link). Briefly, muscle tissues were sliced to 1 mm3 pieces, digested by collagenase II (Worthington biochemical, 700-800 U/mL, cat#LS004177) for an hour and subsequently digested by mixtures of collagenase II and dispase (Life Technologies,11 U/mL, cat#17105-041) for 30 min. The digested mixture was passed 10 times through a 20-gauge needle and filtered through a 40-µm cell strainer (BD Falcon, cat#352340). The erythrocytes were removed by red blood cell lysis (Thermo Fisher Scientific, cat#00-433-57). The human cell suspension was stained with PE-Cy5 anti-human CD45 (BD Pharmingen, cat#555484, 1:25), Percp-Cy5.5 anti-human CD31 (BioLegend, cat#303132, 1:100), AF-488 anti-human CD29 (BioLegend, cat#303016, 1:100) and BV421 anti-human CD56 (BD, cat#562751, 1:100) for 45 min at 4 °C. The mouse cell suspension was stained with a cocktail of APC anti-mouse CD31 (BioLegend, cat#102510, 1:100), APC anti-mouse CD45 (BioLegend, cat#103112, 1:100), FITC anti-mouse Sca1 (BioLegend, cat#108106, 1:100) and Biotin anti-mouse VCAM1 (BioLegend, cat#105703, 1:100) for 45 min at 4 °C. All cell suspensions were washed with PBS and stained with PE/Cy7 Streptavidin (BioLegend, cat#405206, 1:100) for 15 min and sorted by FACS using Aria III or Influx (BD Biosciences).
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5

Isolation of Skeletal Muscle Stem Cells

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Hindlimb muscles from 3-month-old C56BL/6J wild-type mice were dissociated into single cells by enzymatic digestion and live cells were isolated by FACS. Skeletal MuSCs were sorted following described methods (Liu et al., 2015 (link)). Briefly, hindlimb muscles from 3-month-old adult wild-type mice were minced and digested with collagenase for 1 h and MuSCs were released from muscle fibers by further digesting the muscle slurry with collagenase/dispase for an additional 30 min. After filtering out the debris, cells were incubated with the following primary antibodies: biotin anti-mouse CD106 (anti-VCAM1, BioLegend 105704; 1:75), PE/Cy7 Streptavidin (BioLegend 405206; 1:75), Pacific Blue anti-mouse Ly-6A/E (anti-Sca1, BioLegend 108120; 1:75), APC anti-mouse CD31 (BioLegend 102510; 1:75) and APC anti-mouse CD45 (BioLegend 103112; 1:75). Satellite cells were sorted by gating VCAM1-positive, Pacific Blue-labeled Sca1-negative, and APC-labeled CD31/CD45-negative cells. SYTOX Green (ThermoFisher Scientific S7020; 1:30,000) was used as a counterstain.
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6

Multiparametric Flow Cytometry Protocol

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CD3-FITC clone 145–2C11, CD4-PE-Cy7 clone RM4–5, CD4-PE clone RM4–4, CD11a-FITC clone M17/4, CD49d-PE clone R1–2, CXCR5-biotin clone L138D7, PE-Cy7 streptavidin, CD44-FITC and CD44-APC-Cy7 clone IM7, PD-1 APC clone 29F.1A12, GL7-PacBlue and GL7-PE clone GL7, CD19-PerCP-Cy5.5 clone 6B2, CD138-BV421 clone 281–2, IgD-APC-Cy7 clone 11–26c2a, CD95-PE clone SA367H8, CD73-BV605 clone TY/11.8, CD71-BV421 Clone RI7217, and CD80-PE clone 90, were purchased from Biolegend (San Diego, CA). BcL6-PE-CF594 clone K112–91 was purchased from BD Biosciences, San Jose, CA)
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7

Measuring B Cell Calcium Flux

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Mouse peripheral blood was processed to remove RBC via lysis prior to Fc blocking and then stained with antibodies against surface markers including biotin-CD93 (Invitrogen, cat # 13-5892-85), BV605-CD19 (BD, cat # 115539), APC Cy7-CD3 (BioLegend, cat # 100222), Alexa Fluor 647-B220 (BioLegend, cat # 103226), and PE Cy7-streptavidin (BioLegend, cat # 405206). The cells were washed with complete RPMI-1640 pre-warmed to 37°C and stained with Indo-1 AM (Invitrogen, cat # I1223) diluted to 2 μM in warm RPMI-1640 and incubated at 37°C for 30 min before washed and stained with 7-AAD (Invitrogen, cat # A1310).
For acquisition, data scales of the detectors for the BUV395 (379/28) and BUV496 (515/30 450LP) filters were set to linear. Samples were kept at 37°C prior to and during acquisition. Baseline was recorded for 30 sec, followed by the addition of anti-mouse IgM (Jackson ImmunoResearch; cat # 115-006-075) to a final concentration of 10 μg/mL, immediately mixed before resuming acquisition for further 3.5 mins to measure the calcium flux following BCR ligation. At 4 mins post-acquisition, ionomycin (Invitrogen, cat # I24222) was added to the sample tube to a final concentration of 1 μg/mL, immediately mixed before before resuming acquisition for another 4 mins to measure maximal Ca2+ flux output.
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8

In Vivo Platelet Survival Assay

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Endogenous platelet survival was measured by labeling Sulfo–NHS–LC-Biotin (Pierce, Beijing, China) as previously [28 (link)]. In brief, 2 h after tail intravenous injection of 100 mg/kg Sulfo–NHS–LC-Biotin, 200 TCID50 SFTSV intravenously injected into IFNar−/− mice. Blood (10 μL) from the facial vein collected at different time points, after anti-mouse CD41-PE (Biolegend, San Diego, CA, USA) and PE-Cy7-Streptavidin staining (Biolegend, #405206), the biotin-labeled platelets were detected by flow cytometry.
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9

Multiparametric Flow Cytometry Protocol

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CD3-FITC clone 145–2C11, CD4-PE-Cy7 clone RM4–5, CD4-PE clone RM4–4, CD11a-FITC clone M17/4, CD49d-PE clone R1–2, CXCR5-biotin clone L138D7, PE-Cy7 streptavidin, CD44-FITC and CD44-APC-Cy7 clone IM7, PD-1 APC clone 29F.1A12, GL7-PacBlue and GL7-PE clone GL7, CD19-PerCP-Cy5.5 clone 6B2, CD138-BV421 clone 281–2, IgD-APC-Cy7 clone 11–26c2a, CD95-PE clone SA367H8, CD73-BV605 clone TY/11.8, CD71-BV421 Clone RI7217, and CD80-PE clone 90, were purchased from Biolegend (San Diego, CA). BcL6-PE-CF594 clone K112–91 was purchased from BD Biosciences, San Jose, CA)
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10

Naja mossambica mossambica Cardiotoxin Extraction

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Cardiotoxin (CTX) from Naja mossambica mossambica was purchased from Sigma Aldrich (St. Louis, MO, USA). For immunohistochemical staining, Pax7, bromodeoxyuridine (BrdU) and myosin heavy chain (MF20) antibodies were purchased from the Developmental Studies Hybridoma Bank (Iowa City, IA). Ly6b.2 (clone 7/4) and CD11b were purchased from AbD Serotec (Raleigh, NC). For fluorescence-activated cell sorting (FACS), propidium iodide (PI), CD31-APC, CD45-APC, Sca1-PerCP-Cy5.5, Biotinylated-Vcam1; PE/Cy7-streptavidin, Ly6G/C-PE-Cy7, F4/80-Alexa Fluor 488, and CD206-PE were purchased from BioLegend (San Diego, CA). Calcein Blue Viability Dye was purchased from eBioscience (San Diego, CA).
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