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5 protocols using trypticase soy agar

1

Bacterial Strain Cultivation and Storage

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Eight reference strains, including E. coli DMST4212, Listeria monocytogenes DMST 17303, Salmonella typhi DMST 22842, Salmonella enteritidis DMST 15676, Shigella flexneri DMST 44237, Staphylococcus aureus subsp. aureus ATCC 6538, methicillin-resistant S. aureus (MRSA), and Enterococcus faecalis DMST 4736 were used as pathogenic bacteria [11 ]. The bacterial strain cultures were incubated on trypticase soy agar (HiMedia) at 37 °C for 24 h under aerobic conditions. Thereafter, cultured the inoculated colonies overnight in brain heart infusion (BHI) medium (HiMedia) at 37 °C. All bacteria were stored at −80 °C in BHI broth with 30% glycerol until testing.
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2

Quantifying Oral Microbiome Diversity

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The tubes containing the pulp samples were shaken in a tube shaker for 30 s to disperse bacterial aggregates.
Next, 100 μl of bacterial sample was spread, in duplicate, on the following solid media: trypticase soy agar (HiMedia Laboratories, Mumbai, Maharashtra, India) supplemented with 5% sheep blood for total viable microorganism count, Rogosa Agar (HiMedia Laboratories, Mumbai, Maharashtra, India) for Lactobacillus sp. Count, Schaedler K-V Agar (HiMedia Laboratories, Mumbai, Maharashtra, India) for Prevotella sp. count and mitis salivarius agar (MSA) (HiMedia Laboratories, Mumbai, Maharashtra, India) for Streptococcus sp. count.[18 (link)]
The plates were incubated under anaerobic conditions for 1 week, whereas the MSA plates were incubated in an atmosphere of 5% CO2 for 48 h.
After incubation, microbial counts were performed with a digital colony counter (HiMedia-LA660). Cell morphology was evaluated by Gram staining technique.
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3

Formulation and Characterization of Liposomal Vancomycin

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Hydrogenated soy phosphatidylcholine (HSPC) was ordered from lipoid (USA). Stearylamine (SA) and cholesterol (Chol) and 2,3,5-triphenyl tetrazolium chlorides (TTC) were purchased from Sigma (St Louis, MO). Vancomycin was obtained from Dana Pharmaceutical Company (Tehran, Iran). C2DA purchased from Santa Cruz (Texas, USA), chloroform, methanol, crystal violet, and glucose monohydrate were provided by Merck (Darmstadt, Germany). Trypticase soy agar (TSA), trypticase soy broth (TSB), and Mueller Hinton broth (MHB) were purchased from Himedia (Mumbai, India).
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4

Probiotic Strain Characterization Protocol

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De Man, Rogosa, and Sharpe (MRS) broth, potato soluble starch, glucose yeast extract agar, trypticase soy agar, eosin methylene blue agar (EMB Agar), glucose yeast extract agar (GYEA) were purchased from HiMedia, Mumbai, India. Lysozyme, pepsin, fructooligosaccharide (FOS), pancreatin from porcine, bile salt, copper sulfate, and SCFAs standards (acetic, propionic and butyric acids) were procured from Sigma‐Aldrich (St. Louis, MO, USA). Oxyrase was procured from Oxyrase, Inc, Mansfield, OH, USA. Probiotic bacteria B. coagulans MTCC 5856 is a patented strain of Sami Labs Limited and deposited to Microbial Type Culture Collection and Gene Bank (MTCC), Chandigarh, India. E. coli ATCC 25922 was obtained from American Type Culture Collection (ATCC, Manassas, VA, USA). trypticase soy agar (TSA; Becton Dickinson) was used for culturing of bacteria, and culture stocks were maintained in aqueous glycerol (15%, v/v) at −80°C.
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5

Antimicrobial Activity of EntP Peptide in High Salt

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To investigate the activities of the EntP peptide in the presence of high salt concentrations, the MIC was determined as described above, except that fixed concentration of NaCl was added to each well of the microtiter plate. Overnight cultures of S. aureus (ATCC 25923) and E. coli (ATCC 25922) as Gram-positive and Gram-negative model strains were incubated in MHB with 0, 50, 100, or 150 mM NaCl for 4 h. Bacteria were serially diluted and plated in triplicate on Trypticase soy agar (HiMedia, India) plates. CFUs were counted after 24 h of incubation at 37 °C. The stability of EntP peptide in 50% human plasma was evaluated as previously described (Hou et al. 2011 (link)). The human plasma was determined to contain no antimicrobial activity before the test. Then 800 μg/ml of recombinant EntP peptide was diluted 1:1 with fresh human plasma and incubated at 37 °C for 0, 3, or 6 h. After incubation, the antimicrobial activity of each sample was determined by MIC assays with S. aureus (ATCC 25923) and E. coli (ATCC 25922).
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